Browse Element(s) Details


OsAffx.28619.1.S1_at

Description tigr:9635.m02630
TID=OsAffx.28619.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2726011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27230OsAffx.22699.1.S1_x_at2/117+15818057..15826087retrotransposon protein, putative, unclassified
LOC_Os07g27230OsAffx.30486.1.S1_at1/117+15818057..15826087retrotransposon protein, putative, unclassified
LOC_Os07g27240OsAffx.22348.1.S1_at11/117+15828979..15829500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27250OsAffx.28618.1.S1_at11/117+15839610..15840274hypothetical protein
LOC_Os07g27250OsAffx.21595.1.S1_x_at1/117+15839610..15840274hypothetical protein
LOC_Os07g27260OsAffx.28619.1.S1_at11/117+15845706..15846242hypothetical protein
LOC_Os07g27269NANA7+15847601..15847922NA
LOC_Os07g27280OsAffx.5458.1.S1_at11/117+15850535..15852833hypothetical protein
LOC_Os07g27290OsAffx.10222.1.S1_x_at2/117+15858552..15861277hypothetical protein
LOC_Os07g27290Os.45902.1.A1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27290Os.51841.1.S1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27290OsAffx.22442.1.S1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27300Os.27553.1.S1_a_at11/117+15867303..15872372RNA-binding protein Luc7-like 1, putative, expressed
LOC_Os07g27300Os.27553.2.S1_at11/117+15867303..15872372RNA-binding protein Luc7-like 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28619.1.S1_at--1161--1431Chr07:15845736..15845760 (25 bp)
AGCAATGAAACGGGTGTTGGCAATG
LOC_Os07g27260
OsAffx.28619.1.S1_at--462--3291Chr07:15845765..15846143 (25 bp)
CAAAGTGGAGCGAGAGGTAACCAGA
LOC_Os07g27260
OsAffx.28619.1.S1_at--1115--1291Chr07:15846133..15846155 (23 bp)
AGAGGTAACCAGAGAACATCCAGCA
LOC_Os07g27260
OsAffx.28619.1.S1_at--158--5971Chr07:15846142..15846166 (25 bp)
GAGAACATCCAGCAGTACGATTAAT
LOC_Os07g27260
OsAffx.28619.1.S1_at--116--1531Chr07:15846152..15846176 (25 bp)
AGCAGTACGATTAATTAGCGACATT
LOC_Os07g27260
OsAffx.28619.1.S1_at--893--9991Chr07:15846167..15846191 (25 bp)
TAGCGACATTGAAGCTCATGACTTG
LOC_Os07g27260
OsAffx.28619.1.S1_at--134--5691Chr07:15846171..15846195 (25 bp)
GACATTGAAGCTCATGACTTGGATC
LOC_Os07g27260
OsAffx.28619.1.S1_at--11--5411Chr07:15846177..15846201 (25 bp)
GAAGCTCATGACTTGGATCTACTCG
LOC_Os07g27260
OsAffx.28619.1.S1_at--8--4831Chr07:15846180..15846204 (25 bp)
GCTCATGACTTGGATCTACTCGAAC
LOC_Os07g27260
OsAffx.28619.1.S1_at--753--671Chr07:15846184..15846208 (25 bp)
ATGACTTGGATCTACTCGAACTAGT
LOC_Os07g27260
OsAffx.28619.1.S1_at--783--3611Chr07:15846188..15846212 (25 bp)
CTTGGATCTACTCGAACTAGTAATC
LOC_Os07g27260
Target Sequence 
AGCAATGAAACGGGTGTTGGCAATGGCGGCAAAGTGGAGCGAGAGGTAACCAGAGAACATCCAGCAGTACGATTAATTAG
CGACATTGAAGCTCATGACTTGGATCTACTCGAACTAGTAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis