Browse Element(s) Details


OsAffx.2864.1.S1_at

Description tigr:9630.m03332
TID=OsAffx.2864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3496011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34900OsAffx.20366.1.S1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34900Os.20851.1.A1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34910OsAffx.2862.1.S1_at11/112+20941586..20942223hypothetical protein
LOC_Os02g34920OsAffx.2863.1.S1_at10/112+20943949..20946184hypothetical protein
LOC_Os02g34920Os.26886.3.S1_x_at2/112+20943949..20946184hypothetical protein
LOC_Os02g34930OsAffx.12354.1.S1_x_at11/112+20949450..20950151hypothetical protein
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed
LOC_Os02g34950Os.5253.1.S1_at8/112+20957948..20960810ATP-binding family protein, putative, expressed
LOC_Os02g34960OsAffx.2864.1.S1_at11/112+20960969..20962759pentatricopeptide, putative
LOC_Os02g34970Os.47735.1.S1_at11/112+20966957..20968222No apical meristem protein, expressed
LOC_Os02g34980OsAffx.12355.1.S1_at11/112+20975490..20975744hypothetical protein
LOC_Os02g34990Os.53355.1.S1_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.53355.1.S1_s_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990OsAffx.24581.1.S1_x_at10/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.45967.1.A1_at2/112+20980107..20988356ACT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2864.1.S1_at--914--7031Chr02:20962172..20962196 (25 bp)
GTACAACCAACCTATGTCACTTTTC
LOC_Os02g34960
OsAffx.2864.1.S1_at--166--9131Chr02:20962222..20962246 (25 bp)
TGCTGGTCTAGTCTCTGATGGCCGC
LOC_Os02g34960
OsAffx.2864.1.S1_at--132--2451Chr02:20962293..20962317 (25 bp)
AACACTACGCCGCTTTCATTGATGC
LOC_Os02g34960
OsAffx.2864.1.S1_at--400--51Chr02:20962310..20962334 (25 bp)
ATTGATGCTCTTGGTCGGAATCGCC
LOC_Os02g34960
OsAffx.2864.1.S1_at--1029--6731Chr02:20962354..20962378 (25 bp)
GTTCATCAAAGGCTTGTCCTCCAAG
LOC_Os02g34960
OsAffx.2864.1.S1_at--1059--491Chr02:20962379..20962403 (25 bp)
ATCGGTCTGGGTACAACTGGGTCAT
LOC_Os02g34960
OsAffx.2864.1.S1_at--652--8411Chr02:20962408..20962432 (25 bp)
GGCCCTCCTTGGTGCATGTCATGTT
LOC_Os02g34960
OsAffx.2864.1.S1_at--150--4551Chr02:20962469..20962493 (25 bp)
GCCCTGTTCCAGTTGGAGCCTGAGA
LOC_Os02g34960
OsAffx.2864.1.S1_at--1009--3451Chr02:20962495..20962519 (25 bp)
CAGTGGTCGGTATGTCATGTTGTCA
LOC_Os02g34960
OsAffx.2864.1.S1_at--1--2431Chr02:20962633..20962657 (25 bp)
AAAACACATGTTCGTCGCCGATGAC
LOC_Os02g34960
OsAffx.2864.1.S1_at--826--6311Chr02:20962652..20962676 (25 bp)
GATGACACATCTCACCATGAGGCGA
LOC_Os02g34960
Target Sequence 
GTACAACCAACCTATGTCACTTTTCTCGCTGTCCTCACAGCTTGCAGCCATGCTGGTCTAGTCTCTGATGGCCGCCGGAT
TCTTGAATCAATGCAGGACCATGGTGTTGAACCAAGAGCTGAACACTACGCCGCTTTCATTGATGCTCTTGGTCGGAATC
GCCAGCTGGAAGAAGCAAGTGAGTTCATCAAAGGCTTGTCCTCCAAGATCGGTCTGGGTACAACTGGGTCATGGGGGGCC
CTCCTTGGTGCATGTCATGTTCATGGCAATATTGAGATCGCGGAAGAAGTTGCCGAGGCCCTGTTCCAGTTGGAGCCTGA
GAACAGTGGTCGGTATGTCATGTTGTCAAACATATACTCAGCAGCAGGACAGTGGGACGATGCCCGCCAGGTCAGGGCTC
TCATGAAGGGGAAAGGATTGAGGAAGGACCAAGCTTATAGTTGGATAGAGGTGCAGAGAGCAAAACACATGTTCGTCGCC
GATGACACATCTCACCATGAGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis