Browse Element(s) Details


OsAffx.28696.1.S1_x_at

Description tigr:9635.m03078
TID=OsAffx.28696.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3141011/11expressed protein
LOC_Os01g476701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31370OsAffx.16506.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31370Os.6032.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31390OsAffx.22303.1.S1_at11/117+18596522..18597805Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed
LOC_Os07g31410OsAffx.28696.1.S1_x_at11/117+18604453..18605088expressed protein
LOC_Os07g31420Os.15715.1.S1_at11/117+18608658..18612756transposon protein, putative, unclassified, expressed
LOC_Os07g31430Os.37746.1.S1_at9/117+18616597..18617943phosphate-responsive 1 family protein, putative, expressed
LOC_Os07g31440Os.10927.1.S1_x_at11/117+18619688..18623049expressed protein
LOC_Os07g31440Os.10927.2.S1_at10/117+18619688..18623049expressed protein
LOC_Os07g31450Os.10905.1.S1_x_at11/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450OsAffx.10855.1.S1_at2/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450Os.10905.2.S1_at1/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28696.1.S1_x_at--442--8392Chr07:18604663..18604687 (25 bp)
GGCGCCGAGGCGTGGTACTTCTTCA
LOC_Os07g31410
OsAffx.28696.1.S1_x_at--905--2671Chr07:18604768..18604792 (25 bp)
AAGCGGTGGTGCTCGATGGGCGCCA
LOC_Os07g31410
OsAffx.28696.1.S1_x_at--811--7731Chr07:18604772..18604796 (25 bp)
GGTGGTGCTCGATGGGCGCCAAGAA
LOC_Os07g31410
OsAffx.28696.1.S1_x_at--1130--6991Chr07:18604815..18604839 (25 bp)
GTACTGCCAGAGGTTCAGGTACAAG
LOC_Os07g31410
OsAffx.28696.1.S1_x_at--726--9171Chr07:18604819..18604843 (25 bp)
TGCCAGAGGTTCAGGTACAAGGAGA
LOC_Os07g31410
OsAffx.28696.1.S1_x_at--397--3991Chr07:18604860..18604884 (25 bp)
CGTGGCGCCCCGATGGATGATGGTG
LOC_Os07g31410
OsAffx.28696.1.S1_x_at--854--4531Chr07:18604866..18604890 (25 bp)
GCCCCGATGGATGATGGTGGAGTAC
LOC_Os07g31410
OsAffx.28696.1.S1_x_at--898--8531Chr07:18604883..18604907 (25 bp)
TGGAGTACGGCGTCGCCCAGGAACA
LOC_Os07g31410
OsAffx.28696.1.S1_x_at--665--4653Chr07:18604892..18604916 (25 bp)
GCGTCGCCCAGGAACACGACGGCGA
LOC_Os07g31410
OsAffx.28696.1.S1_x_at--446--5911Chr07:18604954..18604978 (25 bp)
GAGCTCGTGCTCTGCAAGATCTTCC
LOC_Os07g31410
OsAffx.28696.1.S1_x_at--1156--5811Chr07:18604987..18605011 (25 bp)
GAGCCTTCCCGTCGCTCGGAGTCGG
LOC_Os07g31410
Target Sequence 
GGCGCCGAGGCGTGGTACTTCTTCAGCGTGCGCCCCCGCGCCCGCGCCCGCGCCCGCGCCGGATCCAAGAGGGCGGCGTC
GCGCGCGGTCGGCGGCGGCGGCGGCAAGCGGTGGTGCTCGATGGGCGCCAAGAAGGCGGTGGAGGGAGGCGGGTACTGCC
AGAGGTTCAGGTACAAGGAGAGGACGGCGGCGGGCGTCGTGGCGCCCCGATGGATGATGGTGGAGTACGGCGTCGCCCAG
GAACACGACGGCGAGGGCGTCGCCCAGGAACACGGCGGCGAGGGCGTCGCCGAGCTCGTGCTCTGCAAGATCTTCCGCTC
CCCCGAGCCTTCCCGTCGCTCGGAGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28696.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis