Browse Element(s) Details


OsAffx.28714.1.S1_x_at

Description tigr:9635.m03201
TID=OsAffx.28714.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3257011/115'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32530Os.19000.1.S1_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32530OsAffx.16526.1.S1_x_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32540OsAffx.28713.1.S1_x_at11/117+19391682..19391900hypothetical protein
LOC_Os07g32550Os.57120.1.S1_at11/117+19401828..19403438dimethyladenosine transferase, putative, expressed
LOC_Os07g32560OsAffx.5501.1.S1_at11/117+19404167..19405305ATP-dependent protease La domain containing protein, expressed
LOC_Os07g32570Os.19519.1.S1_s_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570OsAffx.28714.1.S1_x_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570Os.12165.1.S1_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32580OsAffx.22940.5.S1_at11/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.5.S1_x_at10/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.3.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.18.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.1.S1_s_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.2.S1_s_at3/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32590Os.18234.1.S1_at11/117+19426230..19430540methionine aminopeptidase, type I family protein, expressed
LOC_Os07g32600Os.49200.2.S1_at11/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32600Os.49200.1.S1_at10/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0019379biological_processsulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)
GO:0019421biological_processsulfate reduction, APS pathway
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0004604molecular_functionphosphoadenylyl-sulfate reductase (thioredoxin) activity
GO:0009973molecular_functionadenylyl-sulfate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28714.1.S1_x_at--602--9491Chr07:19409130..19409154 (25 bp)
TCTCGATCGGGTGCGAGCCGTGCAC
LOC_Os07g32570
OsAffx.28714.1.S1_x_at--1078--871Chr07:19409046..19409070 (25 bp)
AGGCCAAGGAGTGCGGCCTCCACAA
LOC_Os07g32570
OsAffx.28714.1.S1_x_at--922--8391Chr07:19408942..19408966 (25 bp)
GGCGCGCCGGACATCTTCGAGAGCA
LOC_Os07g32570
OsAffx.28714.1.S1_x_at--539--2091Chr07:19408932..19408956 (25 bp)
ACATCTTCGAGAGCAGCGGCGTGGT
LOC_Os07g32570
OsAffx.28714.1.S1_x_at--1007--9371Chr07:19408887..19408911 (25 bp)
TCGAGAACCTGCTCCGCCTGGAGAG
LOC_Os07g32570
OsAffx.28714.1.S1_x_at--1093--9471Chr07:19408815..19408839 (25 bp)
TCTGCCAGGCCATGGAGGCGTCCTA
LOC_Os07g32570
OsAffx.28714.1.S1_x_at--258--7251Chr07:19408796..19408820 (25 bp)
GTCCTACCTGGAGCTCGCCGAGAGG
LOC_Os07g32570
OsAffx.28714.1.S1_x_at--870--2811Chr07:19408738..19408762 (25 bp)
AAGTTCCGCGCCGACGGCGAGCAGA
LOC_Os07g32570
OsAffx.28714.1.S1_x_at--787--5891Chr07:19408696..19408720 (25 bp)
GAGCTGCAGCTGCAGAGCTTCCCGA
LOC_Os07g32570
OsAffx.28714.1.S1_x_at--618--1671Chr07:19408654..19408678 (25 bp)
AGCCGCACCGCGAGGCCGATCAAGT
LOC_Os07g32570
OsAffx.28714.1.S1_x_at--194--8411Chr07:19408641..19408665 (25 bp)
GGCCGATCAAGTACCCGTCGGAGAA
LOC_Os07g32570
Target Sequence 
TCTCGATCGGGTGCGAGCCGTGCACCAGGCCCGTGCTTCCCGGCCAGCACGAGCGGGAAGGGCGGTGGTGGTGGGAGGAC
GCCAAGGCCAAGGAGTGCGGCCTCCACAAGGGGAACATCGACGACCAGGGTGGGGCGGCGGCGGCGGCGGCGCACAAGGC
CGGCGGCGCCAACGGCAACGGGTCGGCCGGCGCGCCGGACATCTTCGAGAGCAGCGGCGTGGTGAGCCTCACCCGCGCCG
GCGTCGAGAACCTGCTCCGCCTGGAGAGCCGCGCGGAGCCGTGGCTGGTGGTGCTGTACGCGCCGTGGTGCCCCTTCTGC
CAGGCCATGGAGGCGTCCTACCTGGAGCTCGCCGAGAGGCTGGGCGGCGCGGGCGGCGGCGTGAAGGTGGGCAAGTTCCG
CGCCGACGGCGAGCAGAAGGCGTTCGCGCAGCAGGAGCTGCAGCTGCAGAGCTTCCCGACCATCCTCCTCTTCCCGAGCC
GCACCGCGAGGCCGATCAAGTACCCGTCGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28714.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis