Browse Element(s) Details


OsAffx.28728.1.S1_at

Description tigr:9635.m03286
TID=OsAffx.28728.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3338011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33350Os.49631.2.S1_x_at11/117+19933799..19934729Hsp20/alpha crystallin family protein, expressed
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33380OsAffx.28728.1.S1_at11/117+19955539..19956483hypothetical protein
LOC_Os07g33390Os.47752.1.S1_at9/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33390OsAffx.20433.1.S1_x_at2/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33400Os.23959.1.A1_x_at10/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.23959.1.A1_at5/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.55693.1.S1_at1/117+19963975..19968222hypothetical protein
LOC_Os07g33410OsAffx.1381.2.A1_at6/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33410OsAffx.20433.1.S1_x_at1/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33420Os.32947.2.S1_at11/117+19975950..19977736Cytochrome P450 family protein
LOC_Os07g33430NANA7+19978918..19979710hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28728.1.S1_at--1138--4411Chr07:19955993..19956017 (25 bp)
GCCATGGACAGGTACGTGCCGTTCG
LOC_Os07g33380
OsAffx.28728.1.S1_at--939--8511Chr07:19955997..19956021 (25 bp)
TGGACAGGTACGTGCCGTTCGTGAT
LOC_Os07g33380
OsAffx.28728.1.S1_at--1157--8051Chr07:19956034..19956058 (25 bp)
GGAGACGCAGCGGAATTCCACAGCA
LOC_Os07g33380
OsAffx.28728.1.S1_at--323--4691Chr07:19956043..19956067 (25 bp)
GCGGAATTCCACAGCAAGCACGGAT
LOC_Os07g33380
OsAffx.28728.1.S1_at--339--1491Chr07:19956055..19956079 (25 bp)
AGCAAGCACGGATCAGCACCAAGCA
LOC_Os07g33380
OsAffx.28728.1.S1_at--127--5111Chr07:19956060..19956084 (25 bp)
GCACGGATCAGCACCAAGCATCAAC
LOC_Os07g33380
OsAffx.28728.1.S1_at--905--1531Chr07:19956076..19956100 (25 bp)
AGCATCAACCACGATCATTTTCTTG
LOC_Os07g33380
OsAffx.28728.1.S1_at--1008--9591Chr07:19956090..19956114 (25 bp)
TCATTTTCTTGATCGATGCAAGGTC
LOC_Os07g33380
OsAffx.28728.1.S1_at--525--8851Chr07:19956099..19956123 (25 bp)
TGATCGATGCAAGGTCACGCTGTCC
LOC_Os07g33380
OsAffx.28728.1.S1_at--1040--3991Chr07:19956103..19956127 (25 bp)
CGATGCAAGGTCACGCTGTCCGGGC
LOC_Os07g33380
OsAffx.28728.1.S1_at--556--3931Chr07:19956155..19956179 (25 bp)
CGGCGACCAGCGACGAGCGCGTCAT
LOC_Os07g33380
Target Sequence 
GCCATGGACAGGTACGTGCCGTTCGTGATGGAGACGGCGAGGGAGACGCAGCGGAATTCCACAGCAAGCACGGATCAGCA
CCAAGCATCAACCACGATCATTTTCTTGATCGATGCAAGGTCACGCTGTCCGGGCTGCTCAACCTCATCGACGGGCTGTG
GTCGGCGACCAGCGACGAGCGCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis