Browse Element(s) Details


OsAffx.28778.2.S1_s_at

Description tigr:9635.m03590
TID=OsAffx.28778.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3631011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36280OsAffx.28776.4.S1_at11/117+21690901..21693103F-box domain containing protein
LOC_Os07g36280OsAffx.28776.3.S1_x_at1/117+21690901..21693103F-box domain containing protein
LOC_Os07g36290OsAffx.28776.3.S1_x_at11/117+21699926..21703973F-box domain containing protein
LOC_Os07g36290OsAffx.28776.3.S1_at10/117+21699926..21703973F-box domain containing protein
LOC_Os07g36300OsAffx.28777.1.S1_x_at11/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300OsAffx.28777.2.S1_at9/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300OsAffx.8626.1.S1_at2/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300Os.29958.2.S1_x_at1/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300Os.5606.1.S1_at1/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36310OsAffx.28778.1.S1_x_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.2.S1_s_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.1.S1_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36320NANA7+21719985..21720977F-box domain containing protein
LOC_Os07g36330OsAffx.16582.1.S1_at11/117+21721517..21724704F-box domain containing protein
LOC_Os07g36340OsAffx.22564.1.S1_at11/117+21726595..21730379F-box domain containing protein
LOC_Os07g36360Os.10631.1.S1_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40855.5.S1_x_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_at9/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_x_at6/117+21737978..21741826F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28778.2.S1_s_at--928--5611Chr07:21716948..21716972 (25 bp)
GACAAGCCAACGTTTGCACTGCTGA
LOC_Os07g36310
OsAffx.28778.2.S1_s_at--559--1691Chr07:21716952..21716976 (25 bp)
AGCCAACGTTTGCACTGCTGACGAA
LOC_Os07g36310
OsAffx.28778.2.S1_s_at--928--6851Chr07:21716959..21716983 (25 bp)
GTTTGCACTGCTGACGAAGCTTCAC
LOC_Os07g36310
OsAffx.28778.2.S1_s_at--59--5111Chr07:21716963..21716987 (25 bp)
GCACTGCTGACGAAGCTTCACTTAT
LOC_Os07g36310
OsAffx.28778.2.S1_s_at--981--5391Chr07:21716974..21716998 (25 bp)
GAAGCTTCACTTATCGGAGACTGTC
LOC_Os07g36310
OsAffx.28778.2.S1_s_at--1098--10511Chr07:21716979..21717003 (25 bp)
TTCACTTATCGGAGACTGTCATCAC
LOC_Os07g36310
OsAffx.28778.2.S1_s_at--904--491Chr07:21716986..21717010 (25 bp)
ATCGGAGACTGTCATCACCGATGAC
LOC_Os07g36310
OsAffx.28778.2.S1_s_at--675--1951Chr07:21716993..21717017 (25 bp)
ACTGTCATCACCGATGACGAGGGCG
LOC_Os07g36310
OsAffx.28778.2.S1_s_at--196--4071Chr07:21717010..21717034 (25 bp)
CGAGGGCGGGTACGTATCTCAGCGA
LOC_Os07g36310
OsAffx.28778.2.S1_s_at--417--5311Chr07:21717211..21717235 (25 bp)
GAAGGATTGCTTCGTCATTGAATTG
LOC_Os07g36310
OsAffx.28778.2.S1_s_at--325--9071Chr07:21717218..21717242 (25 bp)
TGCTTCGTCATTGAATTGAAGGACT
LOC_Os07g36310
Target Sequence 
GACAAGCCAACGTTTGCACTGCTGACGAAGCTTCACTTATCGGAGACTGTCATCACCGATGACGAGGGCGGGTACGTATC
TCAGCGAGCCAATCTCACAAAGATGCAAGTGAAGGATTGCTTCGTCATTGAATTGAAGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28778.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis