Browse Element(s) Details


OsAffx.28814.1.S1_x_at

Description tigr:9635.m03848
TID=OsAffx.28814.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY102147 At1g68400T2E12_5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3864011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38600Os.14815.1.S1_at10/117+23183619..23185231expressed protein
LOC_Os07g38610Os.7666.1.S1_at11/117+23185600..23190650UDP-galactose transporter family protein, expressed
LOC_Os07g38620Os.5497.3.S1_x_at11/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38620Os.5497.1.S1_a_at10/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38630OsAffx.5568.1.S1_at11/117+23201132..23201618hypothetical protein
LOC_Os07g38640OsAffx.28814.1.S1_x_at11/117+23207019..23208908Protein kinase domain containing protein
LOC_Os07g38650OsAffx.16615.1.S1_at11/117+23211913..23212245hypothetical protein
LOC_Os07g38660Os.55353.1.S1_at1/117+23212905..23213297hypothetical protein
LOC_Os07g38670Os.50591.1.S1_at3/117+23221421..23222113hypothetical protein
LOC_Os07g38680Os.47130.4.A1_x_at4/117+23224138..23224461retrotransposon protein, putative, unclassified
LOC_Os07g38690Os.55353.1.S1_at11/117+23225690..23226285Ubiquitin-like protein SMT3, putative, expressed
LOC_Os07g38700OsAffx.5569.1.S1_at11/117+23226628..23227611hypothetical protein
LOC_Os07g38710OsAffx.28815.1.S1_at11/117+23232050..23233047hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28814.1.S1_x_at--909--4051Chr07:23207518..23207542 (25 bp)
CGAGGAAGGCCATCCTGTTCGGCGC
LOC_Os07g38640
OsAffx.28814.1.S1_x_at--1063--7571Chr07:23207486..23207510 (25 bp)
GGGCTGAACTACATCCACACGTTCC
LOC_Os07g38640
OsAffx.28814.1.S1_x_at--36--7351Chr07:23207444..23207468 (25 bp)
GTGCACGCGAACGTGAAGCCGTCCA
LOC_Os07g38640
OsAffx.28814.1.S1_x_at--679--1831Chr07:23207440..23207464 (25 bp)
ACGCGAACGTGAAGCCGTCCAACAT
LOC_Os07g38640
OsAffx.28814.1.S1_x_at--203--571Chr07:23207417..23207441 (25 bp)
ATCCTCCTGGACGAGCACGGCGCGG
LOC_Os07g38640
OsAffx.28814.1.S1_x_at--1150--1931Chr07:23207401..23207425 (25 bp)
ACGGCGCGGCGTGCGTCTCCGAGTG
LOC_Os07g38640
OsAffx.28814.1.S1_x_at--1124--7691Chr07:23207374..23207398 (25 bp)
GGGTCATGCGCTACGCCGCCAACAT
LOC_Os07g38640
OsAffx.28814.1.S1_x_at--367--4611Chr07:23207210..23207234 (25 bp)
GCGACGCAGGAGTCCGACGTGTACA
LOC_Os07g38640
OsAffx.28814.1.S1_x_at--226--9271Chr07:23207170..23207194 (25 bp)
TCCTGGAGGTGGTGACCGCCGACAA
LOC_Os07g38640
OsAffx.28814.1.S1_x_at--857--7811Chr07:23207085..23207109 (25 bp)
GGTCAAGATCGGCATGCTGTGCACC
LOC_Os07g38640
OsAffx.28814.1.S1_x_at--777--491Chr07:23207078..23207102 (25 bp)
ATCGGCATGCTGTGCACCGCCGAGG
LOC_Os07g38640
Target Sequence 
CGAGGAAGGCCATCCTGTTCGGCGCGGCGCAGGGGCTGAACTACATCCACACGTTCCCGGCGAGGCCGGCGCTGGTGCAC
GCGAACGTGAAGCCGTCCAACATCCTCCTGGACGAGCACGGCGCGGCGTGCGTCTCCGAGTGCGGGGTCATGCGCTACGC
CGCCAACATCCAGCAGTCCATCCCGCAGCCGCCGCGGTGCCCGCCGGGGCTGTTCCTGGACCGGGCGGCGGCGGCGGCGG
GCGGAGGAGGCTGGCACGGGTACGCGGCGCCGGAGCTGGCGTCCGGCGCCGGCGCCGCGGGCGCGCGCGCGACGCAGGAG
TCCGACGTGTACAGCTTCGGGATGGTGCTCCTGGAGGTGGTGACCGCCGACAATGCCGGGGACGGCAACGGCGGCGGCGG
CGGCGATGGCGGGGAGGATGAGACGATGGGGTGGGTCAAGATCGGCATGCTGTGCACCGCCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28814.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis