Browse Element(s) Details


OsAffx.28857.1.S1_at

Description tigr:9635.m04134
TID=OsAffx.28857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable phytochelatin synthetase (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4132010/11Phytochelatin synthetase-like conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41270NANA7+24732431..24733084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41280Os.6393.1.S1_at11/117+24735233..247404976-phosphogluconolactonase family protein, expressed
LOC_Os07g41290OsAffx.16671.1.S1_at11/117+24742760..24743414expressed protein
LOC_Os07g41300Os.26596.1.S1_s_at11/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41300OsAffx.32241.1.S1_x_at7/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41310Os.9592.1.S1_at11/117+24750092..24753702COBRA-like protein 2 precursor, putative, expressed
LOC_Os07g41320OsAffx.28857.1.S1_at10/117+24753756..24756457Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g41330Os.11994.1.S1_s_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.5591.1.S1_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.11994.1.S1_at10/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.33305.1.S1_at4/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.3.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.1.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41340Os.51451.1.S1_at11/117+24763984..24765018B12D protein, expressed
LOC_Os07g41340OsAffx.5592.1.S1_at1/117+24763984..24765018B12D protein, expressed
LOC_Os07g41350OsAffx.16673.1.S1_s_at11/117+24766403..24767370B12D protein, expressed
LOC_Os07g41360Os.5451.1.S1_at11/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41360Os.55265.1.S1_at1/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009825biological_processmultidimensional cell growth
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0010215biological_processcellulose microfibril organization
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009897cellular_componentexternal side of plasma membrane
GO:0009930cellular_componentlongitudinal side of cell surface (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28857.1.S1_at--1043--1531Chr07:24754735..24754759 (25 bp)
AGCTTCGACTACAAGCCCGTCGTCT
LOC_Os07g41320
OsAffx.28857.1.S1_at--635--7151Chr07:24754301..24754738 (25 bp)
GTCTCCTACGGCTCCATCAATGATA
LOC_Os07g41320
OsAffx.28857.1.S1_at--27--1951NONE
ACGGCTCCATCAATGATACGGCGAT
NONE
OsAffx.28857.1.S1_at--216--6491Chr07:24754280..24754304 (25 bp)
GATACGGCGATGTTCTATGGGCTGA
LOC_Os07g41320
OsAffx.28857.1.S1_at--989--8771Chr07:24754270..24754294 (25 bp)
TGTTCTATGGGCTGAAGTACTTCAA
LOC_Os07g41320
OsAffx.28857.1.S1_at--965--8991Chr07:24754258..24754282 (25 bp)
TGAAGTACTTCAACGACCAGCTGAT
LOC_Os07g41320
OsAffx.28857.1.S1_at--1131--2831Chr07:24754256..24754280 (25 bp)
AAGTACTTCAACGACCAGCTGATGG
LOC_Os07g41320
OsAffx.28857.1.S1_at--424--8411Chr07:24754225..24754249 (25 bp)
GGCCGCACGGGAACGTGCAGTCGGA
LOC_Os07g41320
OsAffx.28857.1.S1_at--1146--2911Chr07:24754187..24754211 (25 bp)
AAGGACGCGAGGACGTTCACGTTCA
LOC_Os07g41320
OsAffx.28857.1.S1_at--758--1831Chr07:24754183..24754207 (25 bp)
ACGCGAGGACGTTCACGTTCAGGCA
LOC_Os07g41320
OsAffx.28857.1.S1_at--1067--951Chr07:24754178..24754202 (25 bp)
AGGACGTTCACGTTCAGGCAGGGAT
LOC_Os07g41320
Target Sequence 
AGCTTCGACTACAAGCCCGTCGTCTCCTACGGCTCCATCAATGATACGGCGATGTTCTATGGGCTGAAGTACTTCAACGA
CCAGCTGATGGAGGCCGGGCCGCACGGGAACGTGCAGTCGGAGGTGCTGATGAGGAAGGACGCGAGGACGTTCACGTTCA
GGCAGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis