Browse Element(s) Details


OsAffx.28897.1.S1_at

Description tigr:9635.m04435
TID=OsAffx.28897.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4417011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44120OsAffx.28896.1.S1_at11/117+26370301..26371359hypothetical protein
LOC_Os07g44120OsAffx.21755.1.S1_x_at1/117+26370301..26371359hypothetical protein
LOC_Os07g44130Os.47310.1.S1_at10/117+26374057..26375891Cytochrome P450 family protein, expressed
LOC_Os07g44140Os.9067.1.S1_at11/117+26380889..26382947Cytochrome P450 family protein, expressed
LOC_Os07g44160Os.27868.1.A1_s_at11/117+26392422..26395161transposon protein, putative, unclassified, expressed
LOC_Os07g44170OsAffx.28897.1.S1_at11/117+26395800..26397917pentatricopeptide, putative
LOC_Os07g44180Os.46402.1.S1_at11/117+26401979..26403015Hydrophobic protein LTI6B, putative, expressed
LOC_Os07g44190Os.13464.1.S1_at11/117+26405007..26407105H/ACA ribonucleoprotein complex subunit 4, putative, expressed
LOC_Os07g44200Os.52622.1.S1_at11/117+26411195..26412764DNA-binding storekeeper protein, putative, expressed
LOC_Os07g44210Os.23232.1.S1_at11/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.6305.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.15286.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28897.1.S1_at--836--1271Chr07:26397431..26397455 (25 bp)
AGATCAAGCCCTATCATTTTTCGAT
LOC_Os07g44170
OsAffx.28897.1.S1_at--515--3671Chr07:26397493..26397517 (25 bp)
CTTTTGTGGCACTACTATCTTGTTG
LOC_Os07g44170
OsAffx.28897.1.S1_at--1010--9971Chr07:26397518..26397542 (25 bp)
TAGCCATGCTGGTCTCATTGACAAG
LOC_Os07g44170
OsAffx.28897.1.S1_at--1154--7671Chr07:26397542..26397566 (25 bp)
GGGTTTGCACTTATATCATTCCATG
LOC_Os07g44170
OsAffx.28897.1.S1_at--229--8171Chr07:26397596..26397620 (25 bp)
GGAACACTACTCATGCATTGTTGAT
LOC_Os07g44170
OsAffx.28897.1.S1_at--179--8891Chr07:26397647..26397671 (25 bp)
TGAGGCTTGGTGTTTCATGTCAAAT
LOC_Os07g44170
OsAffx.28897.1.S1_at--766--3611Chr07:26397699..26397723 (25 bp)
CTTGGAGGGCTCTTGGCAGCATGTA
LOC_Os07g44170
OsAffx.28897.1.S1_at--224--5131Chr07:26397776..26397800 (25 bp)
GCAAAATCCCAATGATCCTGGCTAT
LOC_Os07g44170
OsAffx.28897.1.S1_at--928--551Chr07:26397790..26397814 (25 bp)
ATCCTGGCTATCATATTCTGCTTTC
LOC_Os07g44170
OsAffx.28897.1.S1_at--234--9491Chr07:26397806..26397830 (25 bp)
TCTGCTTTCTAATATCTACGCCGAT
LOC_Os07g44170
OsAffx.28897.1.S1_at--425--3711Chr07:26397821..26397845 (25 bp)
CTACGCCGATGCTGGAATGTGGTCT
LOC_Os07g44170
Target Sequence 
AGATCAAGCCCTATCATTTTTCGATCTAATGAAGAGAGATGGAATTGCTCCAGATAAAGTGACTTTTGTGGCACTACTAT
CTTGTTGTAGCCATGCTGGTCTCATTGACAAGGGTTTGCACTTATATCATTCCATGTTACATGACTACAATATTTCTCCA
GAGAAGGAACACTACTCATGCATTGTTGATCTCTACAGCAGATGTGGGAAGCTTGATGAGGCTTGGTGTTTCATGTCAAA
TATGGCAGAAGAGCCAGAAATCGATGTCCTTGGAGGGCTCTTGGCAGCATGTAGAGTGCATAATAGAATGGACATTGCTG
AGCTGGTTGGGAAAAGAATATTTGAGCAAAATCCCAATGATCCTGGCTATCATATTCTGCTTTCTAATATCTACGCCGAT
GCTGGAATGTGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis