Browse Element(s) Details


OsAffx.28901.2.S1_x_at

Description tigr:9635.m04476
TID=OsAffx.28901.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4457011/11Coleoptile phototropism protein 1, putative
LOC_Os12g313202/11hypothetical protein
LOC_Os03g528801/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44530NANA7+26584187..26588077retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44540NANA7+26595731..26598691retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44550Os.10029.1.S1_at11/117+26601942..26603269Peroxidase family protein, expressed
LOC_Os07g44560OsAffx.5636.1.S1_at11/117+26604045..26609628AMP-binding enzyme family protein
LOC_Os07g44570OsAffx.28901.2.S1_x_at11/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44570OsAffx.28901.1.S1_x_at1/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44580OsAffx.28901.4.S1_x_at11/117+26610959..26611705phototropic-responsive NPH3 family protein, putative
LOC_Os07g44590Os.56899.1.S1_at11/117+26613798..26615100Peroxidase family protein, expressed
LOC_Os07g44600NANA7+26615540..26616371peroxidase, putative
LOC_Os07g44610Os.8636.1.S1_at11/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44610OsAffx.9594.1.S1_at1/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44620Os.37651.1.S1_at11/117+26626783..26629563Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os07g44630OsAffx.28902.1.S1_s_at11/117+26629637..26631991Thymidylate kinase family protein, expressed
LOC_Os07g44640Os.54510.1.S1_at11/117+26632178..26635547protein arginine N-methyltransferase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28901.2.S1_x_at--20--1672Chr12:18816182..18816206 (25 bp)
AGCCCGTCAAGGACGACGCTCTCGT
NONE
OsAffx.28901.2.S1_x_at--410--4212Chr12:18816185..18816208 (24 bp)
CCGTCAAGGACGACGCTCTCGTCTA
NONE
OsAffx.28901.2.S1_x_at--713--9731Chr07:26610344..26610368 (25 bp)
TCAAGGACGACGCTCTCGTCTACGT
LOC_Os07g44570
OsAffx.28901.2.S1_x_at--902--951Chr07:26610347..26610371 (25 bp)
AGGACGACGCTCTCGTCTACGTCCG
LOC_Os07g44570
OsAffx.28901.2.S1_x_at--189--4791Chr07:26610355..26610379 (25 bp)
GCTCTCGTCTACGTCCGCGTCGAGC
LOC_Os07g44570
OsAffx.28901.2.S1_x_at--566--4651Chr07:26610371..26610395 (25 bp)
GCGTCGAGCTCACTGCCTGGAACGT
LOC_Os07g44570
OsAffx.28901.2.S1_x_at--506--5911Chr07:26610376..26610400 (25 bp)
GAGCTCACTGCCTGGAACGTCGCGC
LOC_Os07g44570
OsAffx.28901.2.S1_x_at--703--9152Chr07:26610409..26610433 (25 bp)
TGCGCGGCGGAGTACCTGGAGATGA
LOC_Os07g44570
OsAffx.28901.2.S1_x_at--818--8932Chr12:18816301..18816325 (25 bp)
TGACCGCGCGCGTGGAGGCCTACCT
LOC_Os12g31320
OsAffx.28901.2.S1_x_at--617--1532Chr12:18816328..18816644 (25 bp)
AGCAGGCAGTGCTCCGGCACTCCTG
LOC_Os12g31320
OsAffx.28901.2.S1_x_at--329--1591Chr07:26610563..26610587 (25 bp)
AGCTCGGCATTGTCAGTCGCTGCGT
LOC_Os07g44570
Target Sequence 
AGCCCGTCAAGGACGACGCTCTCGTCTACGTCCGCGTCGAGCTCACTGCCTGGAACGTCGCGCCGCTGCGGTGCGCGGCG
GAGTACCTGGAGATGACGGAGGAGCACGCCGAGGACAACCTGACCGCGCGCGTGGAGGCCTACCTGGAGCAGGCAGTGCT
CCGGCACTCCTGCGAGGCCACCAAGGCGCTCAAGTCCCGCGAGGAGCTGCTGCCGCACGCCGAGGAGCTCGGCATTGTCA
GTCGCTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28901.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis