Browse Element(s) Details


OsAffx.28918.2.S1_x_at

Description tigr:9635.m04569
TID=OsAffx.28918.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4546011/11hypothetical protein
LOC_Os07g454801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45410OsAffx.22542.1.S1_at11/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410Os.32101.2.S1_at2/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410OsAffx.20275.1.S1_at1/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45420OsAffx.14941.1.S1_s_at11/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.1.S1_at10/117+27095759..27096876hypothetical protein
LOC_Os07g45420OsAffx.14941.5.S1_at1/117+27095759..27096876hypothetical protein
LOC_Os07g45430OsAffx.14941.4.S1_s_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45430OsAffx.14941.3.S1_at11/117+27097903..27100524hypothetical protein
LOC_Os07g45440NANA7+27102506..27103796hypothetical protein
LOC_Os07g45450OsAffx.30941.1.S1_x_at11/117+27108260..27109942hypothetical protein
LOC_Os07g45460OsAffx.28918.2.S1_x_at11/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.7.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.5.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.22536.1.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45470NANA7+27125684..27127590hypothetical protein
LOC_Os07g45480OsAffx.28918.5.S1_x_at11/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.7.S1_x_at3/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.2.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.22536.1.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45490OsAffx.28918.7.S1_x_at11/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.28918.5.S1_x_at3/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.22536.1.S1_x_at1/117+27139551..27145247expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28918.2.S1_x_at--365--5971Chr07:27121983..27122007 (25 bp)
GAGAACTTACAGCTACGATCCATAA
LOC_Os07g45460
OsAffx.28918.2.S1_x_at--326--5931Chr07:27122054..27122078 (25 bp)
GAGCATGCTCAGTGTAAGCTCAGCA
LOC_Os07g45460
OsAffx.28918.2.S1_x_at--1085--5311Chr07:27122089..27122113 (25 bp)
GAAGGGACTATCTGACATCTTGAGA
LOC_Os07g45460
OsAffx.28918.2.S1_x_at--413--2271Chr07:27122767..27122791 (25 bp)
AAATGCATTCCTGAAGACTTCGCCC
LOC_Os07g45460
OsAffx.28918.2.S1_x_at--525--5671Chr07:27122782..27122806 (25 bp)
GACTTCGCCCGAGAACTAGAGAAAG
LOC_Os07g45460
OsAffx.28918.2.S1_x_at--593--10491Chr07:27122849..27122873 (25 bp)
TTAATGCACATATGAGACCCAGTCC
LOC_Os07g45460
OsAffx.28918.2.S1_x_at--622--3451Chr07:27122868..27122892 (25 bp)
CAGTCCTTATTGTCCCAGTATCAGG
LOC_Os07g45460
OsAffx.28918.2.S1_x_at--336--2392Chr07:27136026..27136050 (25 bp)
AAACTACAGGTTGCTTTCAGGCGAC
LOC_Os07g45480
OsAffx.28918.2.S1_x_at--234--8131Chr07:27123043..27123067 (25 bp)
GGACTCATGGAGCACAGCACAGCAG
LOC_Os07g45460
OsAffx.28918.2.S1_x_at--946--1491Chr07:27123058..27123082 (25 bp)
AGCACAGCAGTTTCCACTCTTGTGG
LOC_Os07g45460
OsAffx.28918.2.S1_x_at--945--2351Chr07:27123093..27123117 (25 bp)
AAAGCTGATGGGTCGTGACTCTCGT
LOC_Os07g45460
Target Sequence 
GAGAACTTACAGCTACGATCCATAATGACAGGTACAAATGTATAACAGCAAGCCTGTTGTGGAGTATGTGCGAGCATGCT
CAGTGTAAGCTCAGCAACTCAGACCTGAAGGGACTATCTGACATCTTGAGATTGGTGCTGGAAGGAATAATGCATACAAA
AGGAGCAGAACTAGAGGTCCTTATTGGCCTTAGTTCACAAATATGTAAATGCATTCCTGAAGACTTCGCCCGAGAACTAG
AGAAAGGCCAGATTAAGGAGAGATTTGTAAAGAGGCTTGTCGATGAACTTAATGCACATATGAGACCCAGTCCTTATTGT
CCCAGTATCAGGAGGGTGATTGTTCAACATGCTATATACTTGATGGAGTTCAATCCTCGCTACGCAAATGATTTCCATAA
ATGCTGGATGGTGGAAGCATTATCAAAGGTAGAAAGTACACCCTCAAGGGTTGAAAACTACAGGTTGCTTTCAGGCGACA
TGGGACTCATGGAGCACAGCACAGCAGTTTCCACTCTTGTGGCCAGAGCAAAAAAGCTGATGGGTCGTGACTCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28918.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis