Browse Element(s) Details


OsAffx.28922.1.S1_at

Description tigr:9635.m04628
TID=OsAffx.28922.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4605011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46020Os.41695.15.S1_s_at11/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.2.S1_x_at10/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.3.S1_x_at10/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.5.S1_x_at9/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46030Os.32803.2.S1_at1/117+27467151..27470735expressed protein
LOC_Os07g46040Os.31644.3.S1_at3/117+27471744..27480437hypothetical protein
LOC_Os07g46050OsAffx.28922.1.S1_x_at11/117+27482682..27483031hypothetical protein
LOC_Os07g46050OsAffx.28922.1.S1_at11/117+27482682..27483031hypothetical protein
LOC_Os07g46060OsAffx.30966.4.S1_x_at11/117+27484876..27489453expressed protein
LOC_Os07g46060OsAffx.30966.4.S1_at10/117+27484876..27489453expressed protein
LOC_Os07g46060Os.9778.1.S2_at8/117+27484876..27489453expressed protein
LOC_Os07g46070OsAffx.28924.2.S1_at11/117+27494320..27496001hypothetical protein
LOC_Os07g46080OsAffx.30966.4.S1_x_at5/117+27500142..27505460hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28922.1.S1_at--480--4211Chr07:27482714..27482738 (25 bp)
CCGCATCCAGATGCCGGAGTCAGGA
LOC_Os07g46050
OsAffx.28922.1.S1_at--1112--571Chr07:27482718..27482742 (25 bp)
ATCCAGATGCCGGAGTCAGGACGAC
LOC_Os07g46050
OsAffx.28922.1.S1_at--770--1151Chr07:27482731..27482755 (25 bp)
AGTCAGGACGACAGGCGGATATGGC
LOC_Os07g46050
OsAffx.28922.1.S1_at--700--851Chr07:27482777..27482801 (25 bp)
ATGGCTGAATCGCTTTGTTCGCTCG
LOC_Os07g46050
OsAffx.28922.1.S1_at--897--3371Chr07:27482885..27482909 (25 bp)
CACCAAGCTCCACTCTAAGGATGAC
LOC_Os07g46050
OsAffx.28922.1.S1_at--824--3231Chr07:27482888..27482912 (25 bp)
CAAGCTCCACTCTAAGGATGACTTT
LOC_Os07g46050
OsAffx.28922.1.S1_at--1019--4771Chr07:27482891..27482915 (25 bp)
GCTCCACTCTAAGGATGACTTTGCG
LOC_Os07g46050
OsAffx.28922.1.S1_at--816--4331Chr07:27482894..27482918 (25 bp)
CCACTCTAAGGATGACTTTGCGTTC
LOC_Os07g46050
OsAffx.28922.1.S1_at--502--2011Chr07:27482896..27482920 (25 bp)
ACTCTAAGGATGACTTTGCGTTCGC
LOC_Os07g46050
OsAffx.28922.1.S1_at--941--3731Chr07:27482899..27482923 (25 bp)
CTAAGGATGACTTTGCGTTCGCAAC
LOC_Os07g46050
OsAffx.28922.1.S1_at--1000--9771Chr07:27482900..27482924 (25 bp)
TAAGGATGACTTTGCGTTCGCAACA
LOC_Os07g46050
Target Sequence 
CCGCATCCAGATGCCGGAGTCAGGACGACAGGCGGATATGGCGGCCGCCGCCGCGCCGGAAAAATGGCTGAATCGCTTTG
TTCGCTCGGTGGCGCTGATCGAGAGGGTGGGCAATGCGCTCGGCACGCTGGCCTTCACCTGGGCTACCGTCATCCTCCTC
GGCGGCTACCCCACCAAGCTCCACTCTAAGGATGACTTTGCGTTCGCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis