Browse Element(s) Details


OsAffx.28942.1.S1_at

Description tigr:9635.m04776
TID=OsAffx.28942.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4738010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47350Os.15701.2.S1_at11/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47350Os.15701.1.S1_x_at10/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47360Os.11884.1.S1_s_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47360Os.20659.1.S1_x_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47370Os.30015.1.S1_at11/117+28333682..28335904pentatricopeptide, putative, expressed
LOC_Os07g47380OsAffx.28942.1.S1_at10/117+28336051..28337494expressed protein
LOC_Os07g47390OsAffx.16748.1.S1_at11/117+28338018..28338716C2 domain containing protein, expressed
LOC_Os07g47400Os.26494.1.S1_at11/117+28342440..28343698C2 domain containing protein, expressed
LOC_Os07g47410OsAffx.22521.2.S1_x_at11/117+28344918..28348166hypothetical protein
LOC_Os07g47410OsAffx.22521.1.S1_x_at10/117+28344918..28348166hypothetical protein
LOC_Os07g47420Os.18416.1.S1_at11/117+28350881..2835306660S ribosome subunit biogenesis protein NIP7 homolog, putative, expressed
LOC_Os07g47430NANA7+28357686..28358134hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28942.1.S1_at--990--4511NONE
GCCGCCCAGATGTGTCATTTATTCT
NONE
OsAffx.28942.1.S1_at--377--10171Chr07:28337086..28337110 (25 bp)
TATCAAGTTCTTTCCATGCACAAGT
LOC_Os07g47380
OsAffx.28942.1.S1_at--635--2831Chr07:28337107..28337131 (25 bp)
AAGTTTGAGTGGAAGCGCCCTTTCA
LOC_Os07g47380
OsAffx.28942.1.S1_at--372--3311Chr07:28337268..28337292 (25 bp)
CACACCGGTCCGGTATTCTTCTTGT
LOC_Os07g47380
OsAffx.28942.1.S1_at--1005--10731Chr07:28337293..28337317 (25 bp)
TTGCAGAAGTTCAGGTTCCTCTGTA
LOC_Os07g47380
OsAffx.28942.1.S1_at--177--7911Chr07:28337306..28337330 (25 bp)
GGTTCCTCTGTAAAAGCAGCTACTT
LOC_Os07g47380
OsAffx.28942.1.S1_at--645--1511Chr07:28337320..28337344 (25 bp)
AGCAGCTACTTCAAGCAGACCCGAA
LOC_Os07g47380
OsAffx.28942.1.S1_at--883--10671Chr07:28337350..28337374 (25 bp)
TTCCTCTTCTCATAACGATCAATCC
LOC_Os07g47380
OsAffx.28942.1.S1_at--750--6711Chr07:28337391..28337415 (25 bp)
GTTCTGTTTCAGATGCTTATACCAT
LOC_Os07g47380
OsAffx.28942.1.S1_at--863--4891Chr07:28337405..28337429 (25 bp)
GCTTATACCATTATCTCTGGCTATT
LOC_Os07g47380
OsAffx.28942.1.S1_at--976--9451Chr07:28337420..28337444 (25 bp)
TCTGGCTATTGGATTGGCCCTGATA
LOC_Os07g47380
Target Sequence 
GCCGCCCAGATGTGTCATTTATTCTTGGAACAGACATATCAAGTTCTTTCCATGCACAAGTTTGAGTGGAAGCGCCCTTT
CAGCNNNTCACACCGGTCCGGTATTCTTCTTGTTTGCAGAAGTTCAGGTTCCTCTGTAAAAGCAGCTACTTCAAGCAGAC
CCGAAGCTGTTTCCTCTTCTCATAACGATCAATCCAGCAAACATTTATTTGGTTCTGTTTCAGATGCTTATACCATTATC
TCTGGCTATTGGATTGGCCCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis