Browse Element(s) Details


OsAffx.28984.1.S1_x_at

Description tigr:9636.m00099
TID=OsAffx.28984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0199011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01960NANA8+604175..605776HCBT-like putative defense response protein, putative
LOC_Os08g01970NANA8+613255..616064transposon protein, putative, unclassified
LOC_Os08g01980OsAffx.16783.2.S1_at11/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01980OsAffx.16783.1.S1_x_at3/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01990OsAffx.28984.1.S1_at11/118+629043..629594hypothetical protein
LOC_Os08g01990OsAffx.28984.1.S1_x_at11/118+629043..629594hypothetical protein
LOC_Os08g02000Os.7388.2.S1_x_at1/118+630355..637366expressed protein
LOC_Os08g02010OsAffx.16785.1.S1_at11/118+641886..642197hypothetical protein
LOC_Os08g02020OsAffx.16783.1.S1_x_at2/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02020OsAffx.3956.1.S1_at1/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02030Os.19547.1.S1_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030Os.19547.1.S1_x_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030OsAffx.16783.1.S1_x_at2/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02040OsAffx.5678.1.S1_x_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02040Os.53314.1.S1_at11/118+652201..655244pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28984.1.S1_x_at--1109--5471Chr08:629539..629563 (25 bp)
GAACATGCGGCGGCCATATTGTCGG
LOC_Os08g01990
OsAffx.28984.1.S1_x_at--1158--3931Chr08:629532..629556 (25 bp)
CGGCGGCCATATTGTCGGGCGACAT
LOC_Os08g01990
OsAffx.28984.1.S1_x_at--532--6477Chr07:8704685..8704709 (25 bp)
GATACATACCTTCAGATGACGGCGT
NONE
OsAffx.28984.1.S1_x_at--749--1292Chr07:8704698..8704722 (25 bp)
AGATGACGGCGTCTGTGACCACCTT
NONE
OsAffx.28984.1.S1_x_at--1056--672Chr07:8704700..8704724 (25 bp)
ATGACGGCGTCTGTGACCACCTTGA
NONE
OsAffx.28984.1.S1_x_at--58--1951Chr08:629464..629488 (25 bp)
ACGGCGTCTGTGACCACCTTGAGCG
LOC_Os08g01990
OsAffx.28984.1.S1_x_at--70--7191Chr08:629459..629483 (25 bp)
GTCTGTGACCACCTTGAGCGGTCGA
LOC_Os08g01990
OsAffx.28984.1.S1_x_at--80--3891Chr08:629457..629481 (25 bp)
CTGTGACCACCTTGAGCGGTCGAGG
LOC_Os08g01990
OsAffx.28984.1.S1_x_at--604--1711Chr08:629452..629476 (25 bp)
ACCACCTTGAGCGGTCGAGGGCGTC
LOC_Os08g01990
OsAffx.28984.1.S1_x_at--795--4571Chr08:629183..629207 (25 bp)
GCGCTGGCGCAGTGTGGAGACGGCT
LOC_Os08g01990
OsAffx.28984.1.S1_x_at--802--7571Chr08:629073..629097 (25 bp)
GGGGCGACATGGCTTTTTACGCTTT
LOC_Os08g01990
Target Sequence 
GAACATGCGGCGGCCATATTGTCGGGCGACATGGTGGGGCAGGAGGGGATAGGAGGGGATACATACCTTCAGATGACGGC
GTCTGTGACCACCTTGAGCGGTCGAGGGCGTCGAGGGGCGAGGAGGCGGCGCAGGTCGAGGGCGGTGGGGAGGCGAGGGG
CGGCGGCGCGCAGTGGGGACGGCGGCGGCACGGGTGGAGAGGCGAGGGTCGCCGTCGCGGTGTGGGGACGGCTTCTGGTG
GAGGTGGAGGGGCGGCGCGGCCGGCGCCTCTCCGGCTAGGGGTGGAGGCGTGGTGGGAAGGCGATGGGCGGCGGCGCGCA
GTGGGGACGGCGGCGACGCGGGTGGAGAGGAGAGGGGCGCTGGCGCAGTGTGGAGACGGCTGCTGGTGGAGGGGCGGCGC
GGAGGAGAGGCGAGGGGAGGGTGCGGGGCGGCGATGGAGGCGCGCGGAGGAGGGGGCGCGGGTTGCGGGGCGACATGGCT
TTTTACGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28984.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis