Browse Element(s) Details


OsAffx.29010.2.S1_at

Description tigr:9636.m00236
TID=OsAffx.29010.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0327011/11von Willebrand factor type A domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03210OsAffx.20354.1.S1_at2/118+1484061..1486989retrotransposon protein, putative, unclassified
LOC_Os08g03220OsAffx.1646.1.S1_x_at1/118+1487320..1493442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03230OsAffx.29008.1.S1_at10/118+1494267..1495958hypothetical protein
LOC_Os08g03240Os.54803.1.S1_at2/118+1497700..1499939Protein kinase domain containing protein
LOC_Os08g03250NANA8+1502459..1502992hypothetical protein
LOC_Os08g03260OsAffx.29010.1.S1_x_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.29010.1.S1_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.31678.3.S1_x_at1/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.2.S1_at11/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.1.S1_x_at2/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.31678.3.S1_x_at1/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03280OsAffx.29011.1.S1_at11/118+1514540..1515007hypothetical protein
LOC_Os08g03290Os.12168.2.S1_s_at11/118+1518951..1522883Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os08g03300Os.57114.1.S1_at11/118+1525654..1527089F-box domain containing protein, expressed
LOC_Os08g03310Os.23145.1.S1_at11/118+1530265..1534032Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g03320OsAffx.16805.1.S1_at11/118+1534448..1535987F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29010.2.S1_at--1134--8371Chr08:1509657..1509681 (25 bp)
GGCGAGCACGCCGTAGTGCAAAGAC
LOC_Os08g03270
OsAffx.29010.2.S1_at--353--1831Chr08:1509650..1509674 (25 bp)
ACGCCGTAGTGCAAAGACCAGTGGA
LOC_Os08g03270
OsAffx.29010.2.S1_at--783--6131Chr08:1509627..1509651 (25 bp)
GAGGTGGCCACCAACACGGAGCCGT
LOC_Os08g03270
OsAffx.29010.2.S1_at--197--2471Chr08:1509615..1509639 (25 bp)
AACACGGAGCCGTCCATTGAGGTGG
LOC_Os08g03270
OsAffx.29010.2.S1_at--784--8071Chr08:1509592..1509616 (25 bp)
GGAGCGCGAGCGTTTCCGCGTGGAG
LOC_Os08g03270
OsAffx.29010.2.S1_at--760--4511Chr08:1509286..1509310 (25 bp)
GCCGACGTGGTCAATGCCGATGTGT
LOC_Os08g03270
OsAffx.29010.2.S1_at--705--8551Chr08:1509188..1509212 (25 bp)
TGGAGTCGTCGCGAAAGAGAAGAAA
LOC_Os08g03270
OsAffx.29010.2.S1_at--765--8351Chr08:1509162..1509186 (25 bp)
GGCGGCGACGGAAGCTTAAGCTTTT
LOC_Os08g03270
OsAffx.29010.2.S1_at--898--1551Chr08:1509150..1509174 (25 bp)
AGCTTAAGCTTTTTGGATCTGGTCC
LOC_Os08g03270
OsAffx.29010.2.S1_at--1041--4871Chr08:1509143..1509167 (25 bp)
GCTTTTTGGATCTGGTCCGAACTGA
LOC_Os08g03270
OsAffx.29010.2.S1_at--386--9471Chr08:1509133..1509157 (25 bp)
TCTGGTCCGAACTGAGGAAGAAGCC
LOC_Os08g03270
Target Sequence 
GGCGAGCACGCCGTAGTGCAAAGACCAGTGGAGGTGGCCACCAACACGGAGCCGTCCATTGAGGTGGAGCGCGAGCGTTT
CCGCGTGGAGGCAACCGAAGACATCGCGGCGGCGCAAGAAGCAGCCGAGCGCGGCGCGCACGCGGCGGCGAAGGCGATAC
TCGACCGCCGGCAGGAGGCGCTCGCCCGGTCGGCGCCGGGTCTCGCCGGCGACGCCAGGTGCGCGGCGCTGCTGTCGGAG
CTGCGCGAGCTGAGCGCCCGCGTGGCGAGCAGGCGGGAGTACGAGCAGACCGGGCGCGCGTGCATGCTCGCCGGCATGAG
CTCGCACGCACAGCAGCGCGCCACGTCGGTGCAGCTGTTTGGAGCGGCGGCGCCGACGTGGTCAATGCCGATGTGTGGAT
CGGCGGCGCCGCCATCTCTCTCTTTCGGGGGGTTTGGAGGGTTCGCGACGCCGGCGATGCGGAGCATGGTGGAGTCGTCG
CGAAAGAGAAGAAAGGGCGGCGACGGAAGCTTAAGCTTTTTGGATCTGGTCCGAACTGAGGAAGAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29010.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis