Browse Element(s) Details


OsAffx.29086.1.S1_at

Description tigr:9636.m00712
TID=OsAffx.29086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0771011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07640NANA8+4280063..4280476hypothetical protein
LOC_Os08g07650OsAffx.29085.1.S1_at11/118+4282901..4283271hypothetical protein
LOC_Os08g07660OsAffx.29084.2.S1_x_at1/118+4284192..4284740hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_x_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07680OsAffx.16882.1.S1_at11/118+4290881..4291393hypothetical protein
LOC_Os08g07690Os.51406.1.S1_at9/118+4294380..4295067expressed protein
LOC_Os08g07700OsAffx.5740.1.S1_at11/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07700OsAffx.14566.1.S1_at1/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07710OsAffx.29086.1.S1_at11/118+4305440..4305727hypothetical protein
LOC_Os08g07720OsAffx.29087.1.S1_x_at11/118+4309816..4312201Transferase family protein, expressed
LOC_Os08g07730OsAffx.16883.1.S1_x_at11/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730OsAffx.13115.1.S1_at2/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730Os.46622.1.S1_x_at1/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07740Os.49771.1.S1_at9/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07740OsAffx.23994.1.S1_x_at1/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29086.1.S1_at--942--2251Chr08:4305484..4305508 (25 bp)
AAATCAAGGCGATGTTGGTGCGACA
LOC_Os08g07710
OsAffx.29086.1.S1_at--519--6291Chr08:4305494..4305518 (25 bp)
GATGTTGGTGCGACAGCATCAACGA
LOC_Os08g07710
OsAffx.29086.1.S1_at--1046--4951Chr08:4305509..4305533 (25 bp)
GCATCAACGAAACAACACCACGACG
LOC_Os08g07710
OsAffx.29086.1.S1_at--849--4051Chr08:4305535..4305559 (25 bp)
CGATGATGGGAAATTCGGTGTCCTA
LOC_Os08g07710
OsAffx.29086.1.S1_at--695--3151Chr08:4305546..4305570 (25 bp)
AATTCGGTGTCCTATGGAGAAAGGC
LOC_Os08g07710
OsAffx.29086.1.S1_at--65--5571Chr08:4305564..4305588 (25 bp)
GAAAGGCGGAGCAACTGGGCCCCTC
LOC_Os08g07710
OsAffx.29086.1.S1_at--1048--3791Chr08:4305586..4305610 (25 bp)
CTCCCTACTCCTAGGATGGCGGTGG
LOC_Os08g07710
OsAffx.29086.1.S1_at--969--8611Chr08:4305608..4305632 (25 bp)
TGGTGGGCTACTCCTCGACGTGCCA
LOC_Os08g07710
OsAffx.29086.1.S1_at--337--9891Chr08:4305616..4305640 (25 bp)
TACTCCTCGACGTGCCAGTAGTGGG
LOC_Os08g07710
OsAffx.29086.1.S1_at--704--1891Chr08:4305625..4305649 (25 bp)
ACGTGCCAGTAGTGGGCCTTCCCCA
LOC_Os08g07710
OsAffx.29086.1.S1_at--622--2631Chr08:4305649..4305673 (25 bp)
AACCTCCACTCTTCTGGATGGTGAT
LOC_Os08g07710
Target Sequence 
AAATCAAGGCGATGTTGGTGCGACAGCATCAACGAAACAACACCACGACGACGATGATGGGAAATTCGGTGTCCTATGGA
GAAAGGCGGAGCAACTGGGCCCCTCCCTACTCCTAGGATGGCGGTGGTGGGCTACTCCTCGACGTGCCAGTAGTGGGCCT
TCCCCAACCTCCACTCTTCTGGATGGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis