Browse Element(s) Details


OsAffx.2912.1.S1_s_at

Description tigr:9630.m03753
TID=OsAffx.2912.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3906011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39000Os.49663.1.S1_at11/112+23554021..23555796Remorin, C-terminal region family protein, expressed
LOC_Os02g39010Os.11803.1.A1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S2_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39020OsAffx.24642.1.S1_at11/112+23564318..23566420hAT family dimerisation domain containing protein
LOC_Os02g39030OsAffx.24641.1.S1_at11/112+23567096..23569639expressed protein
LOC_Os02g39030Os.21789.2.S1_x_at10/112+23567096..23569639expressed protein
LOC_Os02g39040Os.35065.1.S1_at11/112+23570045..23572405mitochondrial transcription termination factor, putative, expressed
LOC_Os02g39050Os.51940.1.S1_x_at11/112+23572529..23574954Isy1-like splicing family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_s_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39070Os.11948.1.S1_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39070OsAffx.12403.1.S1_s_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39080Os.27442.1.A1_at6/112+23600664..23601421expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2912.1.S1_s_at--934--2711Chr02:23576909..23576933 (25 bp)
AAGCATCTCATGACCATGCCTGCAG
LOC_Os02g39060
OsAffx.2912.1.S1_s_at--193--2971Chr02:23576951..23576975 (25 bp)
AATGGCTTCGAGAACGCTGCCTCAC
LOC_Os02g39060
OsAffx.2912.1.S1_s_at--381--5051Chr02:23577022..23577046 (25 bp)
GCAGACGCCTCTTGGATCAAATCGG
LOC_Os02g39060
OsAffx.2912.1.S1_s_at--636--3591Chr02:23577072..23577096 (25 bp)
CTAGATCAGGCACGGTTCCCTTTCG
LOC_Os02g39060
OsAffx.2912.1.S1_s_at--1067--10611Chr02:23577093..23577117 (25 bp)
TTCGTCAGAACGCTGGAGCTGGTCT
LOC_Os02g39060
OsAffx.2912.1.S1_s_at--539--5891Chr02:23577108..23577132 (25 bp)
GAGCTGGTCTCTTGGGTGCATGCCC
LOC_Os02g39060
OsAffx.2912.1.S1_s_at--980--7771Chr02:23577122..23577146 (25 bp)
GGTGCATGCCCTGTGGCTACGGTCA
LOC_Os02g39060
OsAffx.2912.1.S1_s_at--825--1271Chr02:23577160..23577184 (25 bp)
AGATCAGAGCACACCGGTTAGCCAT
LOC_Os02g39060
OsAffx.2912.1.S1_s_at--1132--10431Chr02:23577177..23577201 (25 bp)
TTAGCCATTCTGGAGCTTCAATTTC
LOC_Os02g39060
OsAffx.2912.1.S1_s_at--4--1811Chr02:23577203..23577227 (25 bp)
ACACCCCGGACTGCTCAGAGATTGG
LOC_Os02g39060
OsAffx.2912.1.S1_s_at--1054--211Chr02:23577879..23577903 (25 bp)
ATATTGCAGGTAACACCTGTCCCGC
LOC_Os02g39060
Target Sequence 
AAGCATCTCATGACCATGCCTGCAGATGCAGGGGCACAGAGCAATGGCTTCGAGAACGCTGCCTCACCCATCATCCATGT
CCAGCCGAAGGAGCTTGCATTGGCATCCACCACGCAGACGCCTCTTGGATCAAATCGGCCAGTTGAGATGATGGCGAAGG
GGCCTAGATCAGGCACGGTTCCCTTTCGTCAGAACGCTGGAGCTGGTCTCTTGGGTGCATGCCCTGTGGCTACGGTCACG
TCCTCTACGCCAGATCAGAGCACACCGGTTAGCCATTCTGGAGCTTCAATTTCCACACCCCGGACTGCTCAGAGATTGGC
TAAATCAGGAGCACAAGGATGAAGAGAAATATGCCTTTTCTCTCTAAAACAAGGATGAAAAAAGAAATATCGAAGATGAC
TCCTCCAAATTCTGAAGTTGTTTTCTTTCTATCAAATGAGAGGATTACCTGCAAGATAATCTCCTGCTGATCGAATTGTG
CTTCAACTTTGATGTAATCTCTGTTTGTTTATAGGCAGAGCTCATATATTGCAGGTAACACCTGTCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2912.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis