Browse Element(s) Details


OsAffx.29254.1.S1_at

Description tigr:9636.m01773
TID=OsAffx.29254.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1762011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17570NANA8+10738728..10742979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17580OsAffx.29253.1.S1_at10/118+10747371..10748471hypothetical protein
LOC_Os08g17589NANA8+10752403..10752955NA
LOC_Os08g17600Os.5966.1.S1_at11/118+10753251..10757279Syntaxin 51, putative, expressed
LOC_Os08g17600Os.12213.1.S1_at1/118+10753251..10757279Syntaxin 51, putative, expressed
LOC_Os08g17610Os.49498.1.S1_at11/118+10761467..10764844expressed protein
LOC_Os08g17620OsAffx.29254.1.S1_at11/118+10765837..10766325hypothetical protein
LOC_Os08g17630OsAffx.5857.1.S1_at11/118+10770737..10770949hypothetical protein
LOC_Os08g17640NANA8+10775143..10776063Zinc finger, C2H2 type family protein
LOC_Os08g17650Os.47390.1.S1_at11/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650Os.47390.2.S1_at9/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.32336.1.A1_at2/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.29256.1.S1_at1/118+10789480..10797500Complex 1 protein containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29254.1.S1_at--830--4011Chr08:10766007..10766031 (25 bp)
CGTCATCATCGTTGTCCTCACGGCG
LOC_Os08g17620
OsAffx.29254.1.S1_at--738--511Chr08:10766014..10766038 (25 bp)
ATCGTTGTCCTCACGGCGCTGCCAT
LOC_Os08g17620
OsAffx.29254.1.S1_at--460--1711Chr08:10766054..10766078 (25 bp)
ACCACCGTCGTTGTACTGCCAGTGT
LOC_Os08g17620
OsAffx.29254.1.S1_at--254--1791Chr08:10766057..10766081 (25 bp)
ACCGTCGTTGTACTGCCAGTGTTGG
LOC_Os08g17620
OsAffx.29254.1.S1_at--474--1991Chr08:10766068..10766092 (25 bp)
ACTGCCAGTGTTGGCCGCCCTAGTG
LOC_Os08g17620
OsAffx.29254.1.S1_at--167--4531Chr08:10766126..10766150 (25 bp)
GCCCGCCTTGCGTGCGCACGGATTT
LOC_Os08g17620
OsAffx.29254.1.S1_at--154--9152Chr08:10766134..10766158 (25 bp)
TGCGTGCGCACGGATTTGCCCAGAG
LOC_Os08g17620
OsAffx.29254.1.S1_at--927--9151Chr08:10766138..10766162 (25 bp)
TGCGCACGGATTTGCCCAGAGCGGC
LOC_Os08g17620
OsAffx.29254.1.S1_at--82--1931Chr08:10766143..10766167 (25 bp)
ACGGATTTGCCCAGAGCGGCACCAA
LOC_Os08g17620
OsAffx.29254.1.S1_at--458--6531Chr08:10766146..10766170 (25 bp)
GATTTGCCCAGAGCGGCACCAACGG
LOC_Os08g17620
OsAffx.29254.1.S1_at--922--7631Chr08:10766204..10766228 (25 bp)
GGGACGCAGCCCGAGCGATGGTGGC
LOC_Os08g17620
Target Sequence 
CGTCATCATCGTTGTCCTCACGGCGCTGCCATCGTCGTCCTCACAGCACCACCGTCGTTGTACTGCCAGTGTTGGCCGCC
CTAGTGCCCCATCGTGGCCTTCTCTCAACGTCGCCTCGAGCCCGCCTTGCGTGCGCACGGATTTGCCCAGAGCGGCACCA
ACGGGCGGAGCCCGAGCGGCGGCGGCGGCGGTGAATGGGGACGCAGCCCGAGCGATGGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis