Browse Element(s) Details


OsAffx.29319.1.S1_at

Description tigr:9636.m02303
TID=OsAffx.29319.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2360010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23570OsAffx.5905.1.S1_at10/118+14127657..14130663B3 DNA binding domain containing protein
LOC_Os08g23580Os.47463.1.S1_x_at3/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580Os.14491.2.S1_x_at3/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580OsAffx.13304.1.S1_at2/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580Os.27037.1.A1_at1/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580OsAffx.5804.1.S1_at1/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23590OsAffx.17115.1.S1_at11/118+14143913..14150421hypothetical protein
LOC_Os08g23590Os.53409.1.A1_at1/118+14143913..14150421hypothetical protein
LOC_Os08g23600OsAffx.29319.1.S1_at10/118+14155196..14156372hypothetical protein
LOC_Os08g23610OsAffx.24330.2.S1_at1/118+14157942..14160773retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620OsAffx.30891.1.S1_x_at2/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.47004.1.S1_at2/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.45173.1.S1_x_at1/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.47999.2.A1_x_at1/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23630NANA8+14168200..14173377retrotransposon protein, putative, unclassified
LOC_Os08g23640OsAffx.5904.1.S1_at3/118+14173997..14175854retrotransposon protein, putative, unclassified
LOC_Os08g23640Os.28943.1.S1_x_at2/118+14173997..14175854retrotransposon protein, putative, unclassified
LOC_Os08g23654Os.45161.1.A1_x_at3/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654Os.45974.1.A1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.13882.2.S1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.22699.1.S1_x_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.30486.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.593.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29319.1.S1_at--301--1551Chr08:14156318..14156342 (25 bp)
AGCTTGGCACCAAGTGCGTCAGGGT
LOC_Os08g23600
OsAffx.29319.1.S1_at--398--5911Chr08:14156269..14156293 (25 bp)
GAGCTTCGTTGCCATTCCCAAACAC
LOC_Os08g23600
OsAffx.29319.1.S1_at--870--10631Chr08:14156255..14156279 (25 bp)
TTCCCAAACACTCCTAGATCTAGGG
LOC_Os08g23600
OsAffx.29319.1.S1_at--641--1271Chr08:14156240..14156264 (25 bp)
AGATCTAGGGTTCCCTTGGCTTGGC
LOC_Os08g23600
OsAffx.29319.1.S1_at--638--4931Chr08:14156222..14156246 (25 bp)
GCTTGGCTCGGGTGGCAGACAGGGA
LOC_Os08g23600
OsAffx.29319.1.S1_at--309--5051Chr08:14156208..14156232 (25 bp)
GCAGACAGGGAGAGCAGCCAAATCG
LOC_Os08g23600
OsAffx.29319.1.S1_at--996--8631Chr08:14156177..14156201 (25 bp)
TGGGAGTCGGCAGCCCTATCGTCGT
LOC_Os08g23600
OsAffx.29319.1.S1_at--1070--9251Chr08:14156120..14156144 (25 bp)
TCCGGTCGATGTCCTTTACCGTGTG
LOC_Os08g23600
OsAffx.29319.1.S1_at--287--7251Chr08:14156110..14156134 (25 bp)
GTCCTTTACCGTGTGTGGTGCAAAT
LOC_Os08g23600
OsAffx.29319.1.S1_at--3--7551NONE
GTGGCCAACGACGTGAGTGCCTTTG
NONE
OsAffx.29319.1.S1_at--419--2591Chr08:14155237..14155261 (25 bp)
AACGATGACGGGACCGCCGTGGAGT
LOC_Os08g23600
Target Sequence 
AGCTTGGCACCAAGTGCGTCAGGGTGCGTGGCGGAGGAGCTCCCACCCCGAGCTTCGTTGCCATTCCCAAACACTCCTAG
ATCTAGGGTTCCCTTGGCTTGGCTCGGGTGGCAGACAGGGAGAGCAGCCAAATCGGCGACGTGGGAGTCGGCAGCCCTAT
CGTCGTTGGCCATGGATGGCGGGAGGGGTCGTCCTCTCTCCGGTCGATGTCCTTTACCGTGTGTGGTGCAAATGGAGATG
GCGATGGTCTACTACGGGGTGGCCAACGACGTGAGTGCCTTTGCCAACGATGACGGGACCGCCGTGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis