Browse Element(s) Details


OsAffx.29365.1.S1_at

Description tigr:9636.m02599
TID=OsAffx.29365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2637011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26310OsAffx.5933.1.S1_at10/118+15915340..15916671hypothetical protein
LOC_Os08g26310Os.33341.2.S1_x_at1/118+15915340..15916671hypothetical protein
LOC_Os08g26320OsAffx.17170.1.S1_at2/118+15917432..15918313hypothetical protein
LOC_Os08g26330NANA8+15920204..15921017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26340NANA8+15929018..15929598hypothetical protein
LOC_Os08g26350Os.9543.1.S1_at11/118+15931705..15932864expressed protein
LOC_Os08g26350Os.50824.1.S1_x_at3/118+15931705..15932864expressed protein
LOC_Os08g26360OsAffx.29364.1.S1_at4/118+15936918..15938639hypothetical protein
LOC_Os08g26370OsAffx.29365.1.S1_at11/118+15940199..15940859hypothetical protein
LOC_Os08g26380OsAffx.5934.1.S1_at11/118+15945914..15946369expressed protein
LOC_Os08g26390NANA8+15949502..15950868hypothetical protein
LOC_Os08g26400OsAffx.15648.1.S1_at1/118+15951462..15953759Zinc knuckle family protein
LOC_Os08g26400OsAffx.19560.1.S1_x_at1/118+15951462..15953759Zinc knuckle family protein
LOC_Os08g26409NANA8+15961112..15961408hypothetical protein
LOC_Os08g26420OsAffx.29368.1.S1_at11/118+15962934..15964091hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29365.1.S1_at--408--3791Chr08:15940265..15940289 (25 bp)
CTCGTCCGGCAGAAGTGGTCTTTTG
LOC_Os08g26370
OsAffx.29365.1.S1_at--432--7251Chr08:15940268..15940292 (25 bp)
GTCCGGCAGAAGTGGTCTTTTGAAC
LOC_Os08g26370
OsAffx.29365.1.S1_at--274--1451Chr08:15940275..15940299 (25 bp)
AGAAGTGGTCTTTTGAACGAGGCGA
LOC_Os08g26370
OsAffx.29365.1.S1_at--841--7651Chr08:15940300..15940324 (25 bp)
GGGAGGCAAGAGAGAGCATCAACAA
LOC_Os08g26370
OsAffx.29365.1.S1_at--597--4951Chr08:15940315..15940339 (25 bp)
GCATCAACAAAATGGCAGCGGCCGC
LOC_Os08g26370
OsAffx.29365.1.S1_at--298--5052Chr11:3039075..3039105 (25 bp)
GCAGACGGCGGCGACACAGTGGGCG
NONE
OsAffx.29365.1.S1_at--751--2131Chr08:15940582..15940606 (25 bp)
ACAGTGGGCGTGACCCTCGATGAGT
LOC_Os08g26370
OsAffx.29365.1.S1_at--1055--7371Chr08:15940591..15940615 (25 bp)
GTGACCCTCGATGAGTTCCTCGGTG
LOC_Os08g26370
OsAffx.29365.1.S1_at--536--1811Chr08:15940594..15940618 (25 bp)
ACCCTCGATGAGTTCCTCGGTGGCA
LOC_Os08g26370
OsAffx.29365.1.S1_at--271--4471Chr08:15940622..15940646 (25 bp)
GCCTGGTGTGCAGGGAGGTTGCGCT
LOC_Os08g26370
OsAffx.29365.1.S1_at--426--7911Chr08:15940638..15940662 (25 bp)
GGTTGCGCTGGCGTCGTGGACCGAC
LOC_Os08g26370
Target Sequence 
CTCGTCCGGCAGAAGTGGTCTTTTGAACGAGGCGAGGGAGGCAAGAGAGAGCATCAACAAAATGGCAGCGGCCGCGGCGC
ACGTCCACATCAAGGCCGTGCAGACGGCGGCGACACAGTGGGCGTGACCCTCGATGAGTTCCTCGGTGGCAAGGGCCTGG
TGTGCAGGGAGGTTGCGCTGGCGTCGTGGACCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis