Browse Element(s) Details


OsAffx.29369.1.S1_at

Description tigr:9630.m01782
TID=OsAffx.29369.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2657011/11hypothetical protein
LOC_Os02g1880011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26520OsAffx.29364.1.S1_at9/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_x_at8/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_at2/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.32925.1.S1_at1/118+16012546..16018852hypothetical protein
LOC_Os08g26530NANA8+16020424..16021041hypothetical protein
LOC_Os08g26544OsAffx.17173.1.S1_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26544OsAffx.17174.1.S1_x_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26560OsAffx.17176.2.S1_s_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.1.S1_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.2.S1_at2/118+16034224..16035198Dirigent-like protein
LOC_Os08g26570OsAffx.29369.1.S1_at11/118+16036741..16038084hypothetical protein
LOC_Os08g26580Os.51235.1.S1_at3/118+16045302..16046772hypothetical protein
LOC_Os08g26590OsAffx.29370.1.S1_at10/118+16048104..16048937hypothetical protein
LOC_Os08g26600OsAffx.17176.2.S1_at11/118+16050772..16051729hypothetical protein
LOC_Os08g26600OsAffx.17176.2.S1_s_at11/118+16050772..16051729hypothetical protein
LOC_Os08g26600OsAffx.17176.1.S1_at4/118+16050772..16051729hypothetical protein
LOC_Os08g26610NANA8+16052168..16054006retrotransposon, putative, centromere-specific
LOC_Os08g26620Os.51235.1.S1_at3/118+16057841..16060718hypothetical protein
LOC_Os08g26630NANA8+16061953..16062153hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29369.1.S1_at--75--3992Chr02:10960014..10960189 (25 bp)
CGGGACAGCTCACACTAGCATTACA
LOC_Os02g18800
OsAffx.29369.1.S1_at--363--7632Chr02:10960170..10960190 (21 bp)
GGGACAGCTCACACTAGCATTACAA
LOC_Os02g18800
OsAffx.29369.1.S1_at--934--5632Chr02:10960170..10960192 (23 bp)
GACAGCTCACACTAGCATTACAAGA
LOC_Os02g18800
OsAffx.29369.1.S1_at--826--4832Chr02:10960172..10960196 (25 bp)
GCTCACACTAGCATTACAAGAAGAT
LOC_Os02g18800
OsAffx.29369.1.S1_at--334--4952Chr02:10960182..10960206 (25 bp)
GCATTACAAGAAGATCAACGCCATT
LOC_Os02g18800
OsAffx.29369.1.S1_at--934--1192Chr02:10960210..10960234 (25 bp)
AGTATGCCTGGCATTACCTGCCGGC
LOC_Os02g18800
OsAffx.29369.1.S1_at--649--10132Chr02:10960212..10960236 (25 bp)
TATGCCTGGCATTACCTGCCGGCTG
LOC_Os02g18800
OsAffx.29369.1.S1_at--911--592Chr02:10960213..10960237 (25 bp)
ATGCCTGGCATTACCTGCCGGCTGC
LOC_Os02g18800
OsAffx.29369.1.S1_at--643--8672Chr02:10960291..10960315 (25 bp)
TGTGAGGCTGGATAATGGATTGGCT
LOC_Os02g18800
OsAffx.29369.1.S1_at--370--4632Chr02:10960371..10960395 (25 bp)
GCGTTGTCGACGTCGGCCTTGAGCC
LOC_Os02g18800
OsAffx.29369.1.S1_at--832--4032Chr02:10960372..10960396 (25 bp)
CGTTGTCGACGTCGGCCTTGAGCCC
LOC_Os02g18800
Target Sequence 
CGGGACAGCTCACACTAGCATTACAAGAAGATCAACGCCATTNCCAGTATGCCTGGCATTACCTGCCGGCTGCCGCCNTG
CTTCGGAGTGGATGGTTCNCCGCGCCCGNCAGCGCGTNGGNGAGGGTGTGAGGCTGGATAATGGATTGGCTNATAGGGAN
TGGTACTTNCCGTCCACCANTCACGCTGTNGGCACNATCTCCTCCGGCGTTGTCGACGTCGGCCTTGAGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis