Browse Element(s) Details


OsAffx.29372.1.S1_at

Description tigr:9636.m02636
TID=OsAffx.29372.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2674011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26710Os.15737.1.S1_x_at11/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.14313.1.S1_at2/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.21973.1.S1_at1/118+16103043..16114894expressed protein
LOC_Os08g26700Os.49243.2.S1_x_at11/118+16104619..16107419expressed protein
LOC_Os08g26700Os.49243.1.S1_x_at10/118+16104619..16107419expressed protein
LOC_Os08g26720OsAffx.5941.1.S1_at10/118+16118693..16120489hypothetical protein
LOC_Os08g26730NANA8+16127664..16128425retrotransposon, putative, centromere-specific
LOC_Os08g26740OsAffx.29372.1.S1_at11/118+16131084..16134652hypothetical protein
LOC_Os08g26750NANA8+16137870..16139106retrotransposon protein, putative, unclassified
LOC_Os08g26760NANA8+16140321..16141746retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26770NANA8+16142115..16143941retrotransposon protein, putative, unclassified
LOC_Os08g26780NANA8+16144476..16144910retrotransposon protein, putative, unclassified
LOC_Os08g26790OsAffx.31777.3.S1_at11/118+16145505..16146739Transposable element protein, putative, Transposase_28
LOC_Os08g26800Os.31929.3.S1_x_at2/118+16148819..16150513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26800Os.31929.2.S1_x_at1/118+16148819..16150513retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29372.1.S1_at--807--8771Chr08:16134063..16134087 (25 bp)
TGTTTTCCTTTGACAGTAACCAGTT
LOC_Os08g26740
OsAffx.29372.1.S1_at--1036--7031Chr08:16134117..16134141 (25 bp)
GTAAAGCCCTAGTCCCTATTAATGA
LOC_Os08g26740
OsAffx.29372.1.S1_at--517--8451Chr08:16134151..16134175 (25 bp)
GGCCAAACTTGTAGATATCGCTCAT
LOC_Os08g26740
OsAffx.29372.1.S1_at--40--531Chr08:16134167..16134191 (25 bp)
ATCGCTCATCGGCTAAGGAACTCTT
LOC_Os08g26740
OsAffx.29372.1.S1_at--802--10431Chr08:16134200..16134224 (25 bp)
TTAGTCATCGACTGTGGGCCGATCA
LOC_Os08g26740
OsAffx.29372.1.S1_at--503--5372Chr09:2647093..2647501 (25 bp)
GAAGAAATCCACAGCCAGATCCCGG
NONE
OsAffx.29372.1.S1_at--903--4751Chr08:16134269..16134293 (25 bp)
GCTGACATCATTTCTCCAGTTGTGT
LOC_Os08g26740
OsAffx.29372.1.S1_at--358--2671Chr08:16134381..16134405 (25 bp)
AAGCGAATCGACTATCCATCAAGGA
LOC_Os08g26740
OsAffx.29372.1.S1_at--722--3011Chr08:16134510..16134534 (25 bp)
AATGCAGGGCCGACATATCATCGGA
LOC_Os08g26740
OsAffx.29372.1.S1_at--9--1491Chr08:16134537..16134561 (25 bp)
AGCAAAAACTTGTTGATCTCCCCAA
LOC_Os08g26740
OsAffx.29372.1.S1_at--583--1351Chr08:16134591..16134615 (25 bp)
AGAGATCCATCAAGCACCTCTCGGA
LOC_Os08g26740
Target Sequence 
TGTTTTCCTTTGACAGTAACCAGTTCATGGACGAAGAACGGGAGGAGGCTACCAGTAAAGCCCTAGTCCCTATTAATGAT
GATATCAAGGCCAAACTTGTAGATATCGCTCATCGGCTAAGGAACTCTTTGGATTCCTTAGTCATCGACTGTGGGCCGAT
CAGAGCCAGGTTTGAAGAAATCCACAGCCAGATCCCGGAAGCCCTTGCTGACATCATTTCTCCAGTTGTGTATTTAGAGC
AACATCGGTTCAAACTGGAATGGGCGAGGCAGAGGATCGCAGACAGGCGCGAGAGGACTAAGCTGAAGGTCATGATCCAA
GCGAATCGACTATCCATCAAGGAAGAAAAAACCAAACTTGACGAGATGGAGGCTGGCCCAAGTTCTACTCAAGCCAACAG
AGATCGGCTCAGAACTAGGGAGGCAGAGTTGGTAGCTGAGCTTGAAAAATGCAGGGCCGACATATCATCGGAGGAGCAAA
AACTTGTTGATCTCCCCAACGCCATAGAGGAACAGAGATCCAAACTGAAGAGATCCATCAAGCACCTCTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis