Browse Element(s) Details


OsAffx.29407.2.S1_at

Description tigr:9636.m02866
TID=OsAffx.29407.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Response regulator receiver domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g289509/11Response regulator receiver domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28930OsAffx.2069.1.S1_at1/118+17554333..17560815retrotransposon, putative, centromere-specific
LOC_Os08g28940OsAffx.17219.1.S1_at11/118+17566362..17570794F-box domain containing protein
LOC_Os08g28950OsAffx.29407.2.S1_at9/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28950OsAffx.29407.1.S1_at4/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28950OsAffx.32068.1.S1_at1/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28960OsAffx.29408.1.S1_at10/118+17587876..17592203expressed protein
LOC_Os08g28980Os.26049.1.S2_at11/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28980Os.26049.1.S1_at11/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28980OsAffx.26666.1.S1_x_at1/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28970Os.9700.1.S1_at10/118+17597590..17599043expressed protein
LOC_Os08g28990Os.41695.15.S1_s_at11/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.2.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.3.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.5.S1_x_at9/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.4.S1_x_at1/118+17605284..17611421transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0006950biological_processresponse to stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009736biological_processcytokinin mediated signaling
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29407.2.S1_at--1019--7571Chr08:17579083..17579107 (25 bp)
GGGCTGTTCGCACGCAAAATCAAGA
LOC_Os08g28950
OsAffx.29407.2.S1_at--161--5051Chr08:17579092..17579116 (25 bp)
GCACGCAAAATCAAGAAGTACGCCG
LOC_Os08g28950
OsAffx.29407.2.S1_at--920--9251Chr08:17579170..17579194 (25 bp)
TCCTGCCGACACGTTGGGCAGTTGG
LOC_Os08g28950
OsAffx.29407.2.S1_at--77--2171Chr08:17579178..17579202 (25 bp)
ACACGTTGGGCAGTTGGGCCTGCGA
LOC_Os08g28950
OsAffx.29407.2.S1_at--234--8491Chr08:17579237..17579257 (21 bp)
TGGCTCGTCGGTCCATCAGAGTGAC
LOC_Os08g28950
OsAffx.29407.2.S1_at--965--9391NONE
TCGTCGGTCCATCAGAGTGACTGCA
NONE
OsAffx.29407.2.S1_at--829--3971NONE
CGGTCCATCAGAGTGACTGCAGTAG
NONE
OsAffx.29407.2.S1_at--693--5491Chr08:17581654..17581678 (25 bp)
GAACATGATTGTTAGCGATTACTGT
LOC_Os08g28950
OsAffx.29407.2.S1_at--348--9831Chr08:17581843..17581867 (25 bp)
TAAACTAGCACATCTCCCAGTGGTA
LOC_Os08g28950
OsAffx.29407.2.S1_at--101--2031Chr08:17581846..17581870 (25 bp)
ACTAGCACATCTCCCAGTGGTAATT
LOC_Os08g28950
OsAffx.29407.2.S1_at--363--1491Chr08:17581849..17581873 (25 bp)
AGCACATCTCCCAGTGGTAATTGCT
LOC_Os08g28950
Target Sequence 
GGGCTGTTCGCACGCAAAATCAAGAAGTACGCCGTCATCTCCAGCTCCGGCGGGAAGGAGAAGAAGAAGAGCTCGTCAAG
AAGCTCTTCCTGCCGACACGTTGGGCAGTTGGGCCTGCGAGTTCAACGCCGCCCTCACCATTCCCTTTTTCCACTGGCTC
GTCGGTCCATCAGAGTGACTGCAGTAGAAAGTGTCATGCAAGCATTGATGTTTTTGGATTCGGAACATGATGTGAACATG
ATTGTTAGCGATTACTGTATGCCAGACATGACCGGCTATGACTTACTCATGGAAGTGAAGAAATCACCTAAACTAGCACA
TCTCCCAGTGGTAATTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29407.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis