Browse Element(s) Details


OsAffx.29419.3.S1_at

Description tigr:9636.m02934
TID=OsAffx.29419.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2955011/11hypothetical protein
LOC_Os04g115002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g295302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g184201/11retrotransposon protein, putative, unclassified
LOC_Os04g197601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g137001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g161201/11retrotransposon protein, putative, unclassified
LOC_Os08g290601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29500Os.15617.1.S1_a_at11/118+17954736..17959137repressor protein, putative, expressed
LOC_Os08g29510OsAffx.5977.1.S1_at11/118+17960560..17962918regulatory protein, putative
LOC_Os08g29520Os.18417.1.A1_at11/118+17965926..17970068Cytochrome b561 family protein, expressed
LOC_Os08g29520Os.47549.1.A1_s_at11/118+17965926..17970068Cytochrome b561 family protein, expressed
LOC_Os08g29530Os.22570.1.S1_at11/118+17970430..17975517Double-stranded RNA binding motif family protein, expressed
LOC_Os08g29540OsAffx.19069.1.S1_at1/118+17977826..17983238retrotransposon protein, putative, unclassified
LOC_Os08g29550OsAffx.29419.3.S1_at11/118+17983779..17985502hypothetical protein
LOC_Os08g29550OsAffx.21161.1.S1_at1/118+17983779..17985502hypothetical protein
LOC_Os08g29560Os.51693.1.S1_at11/118+17989347..17994597retrotransposon protein, putative, unclassified
LOC_Os08g29560Os.53737.1.S1_at5/118+17989347..17994597retrotransposon protein, putative, unclassified
LOC_Os08g29570Os.17020.1.S1_x_at11/118+17995692..18000215PDR-type ABC transporter 1, putative, expressed
LOC_Os08g29580OsAffx.17228.1.S1_at11/118+18009435..18010342hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29419.3.S1_at--435--1531Chr08:17985078..17985102 (25 bp)
AGCAGTCACGAGTCTCTCTTAGAGA
LOC_Os08g29550
OsAffx.29419.3.S1_at--667--3431Chr08:17985030..17985054 (25 bp)
CAGTTATCTCAAACCGATTCGTTGG
LOC_Os08g29550
OsAffx.29419.3.S1_at--495--4233Chr05:7572337..7572598 (25 bp)
CCGTCAGTTCTACACTTGCTTGAAG
LOC_Os05g13700
OsAffx.29419.3.S1_at--1133--4911Chr08:17984963..17984987 (25 bp)
GCTTGAAGACCAGGGCTCATCGTCG
LOC_Os08g29550
OsAffx.29419.3.S1_at--813--5775Chr11:16633381..16633805 (25 bp)
GACGAGTACACCACGCGATGTGTTT
LOC_Os11g29530
OsAffx.29419.3.S1_at--784--6251Chr08:17984908..17984932 (25 bp)
GATGGGATCAGCATGTCTACGCGCG
LOC_Os08g29550
OsAffx.29419.3.S1_at--586--3812Chr08:17664617..17664641 (25 bp)
CCCTTATGATCCTGTTCTGAACGAT
LOC_Os08g29060
OsAffx.29419.3.S1_at--253--1491Chr08:17984734..17984758 (25 bp)
AGCAACGCATTCAAGGAGGCCGCTG
LOC_Os08g29550
OsAffx.29419.3.S1_at--119--8032Chr11:16634013..16634037 (25 bp)
GGAGTACTGCCAGAACAACCGCCAA
LOC_Os11g29530
OsAffx.29419.3.S1_at--718--52Chr08:17983869..17983893 (25 bp)
ATTGAGGGACTACGTTCGACGCTTT
LOC_Os08g29550
OsAffx.29419.3.S1_at--829--1831Chr08:17983810..17983834 (25 bp)
ACGCTTTTGTGATCCGCGCTTTCAA
LOC_Os08g29550
Target Sequence 
AGCAGTCACGAGTCTCTCTTAGAGATGCGGACAAGGAACGAGGAGCGACAGTTATCTCAAACCGATTCGTTGGGGTAATC
GACATCGATCCTCACGAGCCGTCAGTTCTACACTTGCTTGAAGACCAGGGCTCATCGTCGACGAGTACACCACGCGATGT
GTTTGCTATCGATGGGATCAGCATGTCTACGCGCGCTAACGTAGAAGCGGAGGATCAAGTGGTTACACCGGCCCAGCACA
TCAGGGCCATGAACGCAATACTGAGGGAAACCCCTTATGATCCTGTTCTGAACGATGATCTCGCACAGTGGACAGAACGA
CTACGGGAATCAGTGGCTAACCTCAGCAACGCATTCAAGGAGGCCGCTGCCGGAGTACTGCCAGAACAACCGCCAACTAG
CGGAACTTACAAGCGCCATGCGATCGAAGACGACCTGCACGCGTTGACACAGAATCCACGTGAATCATTGAGGGACTACG
TTCGACGCTTTAATGAGTGCAGGAATACGATCCCCAAGATCACCGACGCTTTTGTGATCCGCGCTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29419.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis