Browse Element(s) Details


OsAffx.29480.3.S1_at

Description tigr:9636.m03302
TID=OsAffx.29480.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA polymerases K 14 to 18 kDa subunit, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3299010/11RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os03g018901/11rolled leaf1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32950OsAffx.20313.1.S1_x_at3/118+20313716..20315744hypothetical protein
LOC_Os08g32960Os.31636.1.S1_at11/118+20317190..20319428Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os08g32970Os.11277.1.S1_s_at11/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.11277.1.S1_at9/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.13008.2.S1_at1/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32980Os.15822.1.S1_s_at11/118+20328910..20332352expressed protein
LOC_Os08g32980Os.53996.1.S1_at11/118+20328910..20332352expressed protein
LOC_Os08g32990OsAffx.29480.1.S1_s_at11/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g32990OsAffx.29480.3.S1_at10/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g33000OsAffx.29480.2.S1_at11/118+20340751..20346111hypothetical protein
LOC_Os08g33000Os.52575.1.S1_x_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33000OsAffx.29326.1.S1_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33010OsAffx.29481.1.S1_at11/118+20347250..20348684F-box domain containing protein
LOC_Os08g33020OsAffx.17306.1.S1_x_at11/118+20349503..20350613hypothetical protein
LOC_Os08g33020OsAffx.27171.1.S1_at2/118+20349503..20350613hypothetical protein
LOC_Os08g33030OsAffx.29482.3.S1_x_at11/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.29482.5.S1_x_at4/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_at1/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_x_at1/118+20357917..20360021hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006351biological_processtranscription, DNA-dependent
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0009733biological_processresponse to auxin stimulus
GO:0009855biological_processdetermination of bilateral symmetry
GO:0009887biological_processorgan morphogenesis
GO:0009943biological_processadaxial/abaxial axis specification
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009955biological_processadaxial/abaxial pattern formation
GO:0009956biological_processradial pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010014biological_processmeristem initiation
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010073biological_processmeristem maintenance
GO:0010075biological_processregulation of meristem size
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0010089biological_processxylem histogenesis
GO:0030154biological_processcell differentiation
GO:0045597biological_processpositive regulation of cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0005515molecular_functionprotein binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29480.3.S1_at--262--4231Chr08:20337823..20337929 (25 bp)
CCGAAGCAGATCAAGTTTTCCCTGT
LOC_Os08g32990
OsAffx.29480.3.S1_at--242--1531Chr08:20337827..20337933 (25 bp)
AGCAGATCAAGTTTTCCCTGTTCTC
LOC_Os08g32990
OsAffx.29480.3.S1_at--672--1271Chr08:20337830..20337936 (25 bp)
AGATCAAGTTTTCCCTGTTCTCTGT
LOC_Os08g32990
OsAffx.29480.3.S1_at--582--2831Chr08:20337918..20337941 (24 bp)
AAGTTTTCCCTGTTCTCTGTGACAA
LOC_Os08g32990
OsAffx.29480.3.S1_at--228--6811Chr08:20337919..20337943 (25 bp)
GTTTTCCCTGTTCTCTGTGACAAAA
LOC_Os08g32990
OsAffx.29480.3.S1_at--465--10292Chr08:20337921..20337945 (25 bp)
TTTCCCTGTTCTCTGTGACAAAAAC
LOC_Os08g32990
OsAffx.29480.3.S1_at--281--6731Chr08:20337928..20337952 (25 bp)
GTTCTCTGTGACAAAAACACTTGTT
LOC_Os08g32990
OsAffx.29480.3.S1_at--759--2471Chr08:20337943..20337967 (25 bp)
AACACTTGTTATGGCAGTTTTAGGT
LOC_Os08g32990
OsAffx.29480.3.S1_at--211--11Chr08:20337950..20337974 (25 bp)
GTTATGGCAGTTTTAGGTACCCAGG
LOC_Os08g32990
OsAffx.29480.3.S1_at--175--8251Chr08:20337955..20337976 (22 bp)
GGCAGTTTTAGGTACCCAGGTAGCT
LOC_Os08g32990
OsAffx.29480.3.S1_at--591--10431NONE
TTAGGTACCCAGGTAGCTGCACATC
NONE
Target Sequence 
CCGAAGCAGATCAAGTTTTCCCTGTTCTCTGTGACAAAAACACTTGTTATGGCAGTTTTAGGTACCCAGGTAGCTGCACA
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29480.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis