Browse Element(s) Details


OsAffx.29482.5.S1_x_at

Description tigr:9632.m03686
TID=OsAffx.29482.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3899011/11hypothetical protein
LOC_Os11g090504/11hypothetical protein
LOC_Os08g330304/11hypothetical protein
LOC_Os10g362291/11Mov34/MPN/PAD-1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed
LOC_Os04g38950Os.6876.1.S1_at11/114+22920087..22923716Anthranilate synthase component II, putative, expressed
LOC_Os04g38960Os.33954.2.S1_at11/114+22925967..22928295expressed protein
LOC_Os04g38970Os.32953.1.S2_at11/114+22929129..22932637expressed protein
LOC_Os04g38970Os.32953.1.S1_at11/114+22929129..22932637expressed protein
LOC_Os04g38980Os.53838.1.S1_at6/114+22934700..22939402pentatricopeptide, putative, expressed
LOC_Os04g38990OsAffx.29482.5.S1_x_at11/114+22940714..22942666hypothetical protein
LOC_Os04g38990OsAffx.29482.3.S1_x_at3/114+22940714..22942666hypothetical protein
LOC_Os04g39000NANA4+22944247..22944735Rf1 protein, mitochondrial precursor, putative
LOC_Os04g39010Os.50287.1.S1_at11/114+22946455..22947228heavy metal-associated domain containing protein, expressed
LOC_Os04g39020Os.26839.1.S1_at11/114+22952409..22957231Betaine-aldehyde dehydrogenase, putative, expressed
LOC_Os04g39030OsAffx.4023.1.S1_x_at11/114+22959561..22963756POT family protein
LOC_Os04g39030Os.22928.1.S1_x_at1/114+22959561..22963756POT family protein
LOC_Os04g39040Os.5519.1.S1_at10/114+22966827..22971686UBX domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29482.5.S1_x_at--560--9976Chr07:21828876..21828901 (25 bp)
TACCTACTAGATACAGGAGCTGGGC
NONE
OsAffx.29482.5.S1_x_at--728--2035Chr07:21828881..21828906 (25 bp)
ACTAGATACAGGAGCTGGGCGTCGA
NONE
OsAffx.29482.5.S1_x_at--183--4652Chr04:22942091..22942115 (25 bp)
GCGTCGAGGCGTCGAGGTATCGTCG
LOC_Os04g38990
OsAffx.29482.5.S1_x_at--432--6911Chr04:22942107..22942131 (25 bp)
GTATCGTCGCCGACGGCCGTGTCCT
LOC_Os04g38990
OsAffx.29482.5.S1_x_at--346--3811Chr04:22942465..22942489 (25 bp)
CTCCATGCCGGAGCTCGGTGACGGT
LOC_Os04g38990
OsAffx.29482.5.S1_x_at--101--7311Chr04:22942503..22942527 (25 bp)
GTGCTGCCGACGTCAGCCTCATCTG
LOC_Os04g38990
OsAffx.29482.5.S1_x_at--601--811Chr04:22942538..22942562 (25 bp)
ATGGTGGCCTTCGTTCTCGCGTCTG
LOC_Os04g38990
OsAffx.29482.5.S1_x_at--916--10571Chr04:22942551..22942575 (25 bp)
TTCTCGCGTCTGAGGAAGGTGGACA
LOC_Os04g38990
OsAffx.29482.5.S1_x_at--917--4037Chr10:19042376..19042400 (25 bp)
CGATCCCGTTGGGACAGTATCCCAA
LOC_Os10g36229
OsAffx.29482.5.S1_x_at--373--8116Chr04:22942592..22942616 (25 bp)
GGACAGTATCCCAACGGGATACCGG
LOC_Os04g38990
OsAffx.29482.5.S1_x_at--273--1754Chr04:22942612..22942636 (25 bp)
ACCGGTATATAGCAGCTCCCCTACA
LOC_Os04g38990
Target Sequence 
TACCTACTAGATACAGGAGCTGGGCGTCGAGGCGTCGAGGTATCGTCGCCGACGGCCGTGTCCTCCCCCGTCCATGCTCC
ACACTGAACCCGAACCTCATCACCGGCAGCCGCATCCTCCCCCGTCCACGGTCCACATCAGAGCTCGTCGCCGGCGACCG
CGTCCTCCGCCGGGACCTCGTCACCGGCGGCCACGTCCATCGTCCACGCCTCAGCCGGTGGCTGCGTCCTCCACGCCGGA
GCTCGTCACCGGTGCCGCCGCTATCACTACGCAGGATCCTCCGCCGTCCACGCCCCACGCCGGAGCTCGTCGCCGGCGCC
GTCTCTGTCACCACACGCAGGATCCTCCGCCGTCCATGCGACCATGCCCCACGCCGGAACTCGCCGGCAGCCGCGTCCTC
CATGCCGGAGCTCGGTGACGGTGGCGGCTGCGTCCGTGCTGCCGACGTCAGCCTCATCTGCGCTGCTCCCATGGTGGCCT
TCGTTCTCGCGTCTGAGGAAGGTGGACAGGGGGCGATCCCGTTGGGACAGTATCCCAACGGGATACCGGTATATAGCAGC
TCCCCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29482.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis