Browse Element(s) Details


OsAffx.29486.3.S1_at

Description tigr:9629.m03231
TID=OsAffx.29486.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g344509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34390Os.17159.1.S1_at11/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34390Os.49333.1.S1_at1/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34400OsAffx.9060.1.S1_at11/111+19299540..19301255transposon protein, putative, Pong sub-class
LOC_Os01g34410Os.41074.1.S1_at3/111+19301812..19303778transposon protein, putative, Pong sub-class
LOC_Os01g34420Os.50056.1.S1_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420Os.50056.1.S1_x_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.1.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.2.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34430OsAffx.11314.1.S1_at10/111+19310796..19315354transcription factor, putative
LOC_Os01g34430Os.41072.1.S1_at4/111+19310796..19315354transcription factor, putative
LOC_Os01g34440OsAffx.9058.1.S1_at11/111+19317445..19318362hypothetical protein
LOC_Os01g34440Os.10191.1.S1_at1/111+19317445..19318362hypothetical protein
LOC_Os01g34450Os.36927.1.S1_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.5.S1_s_at11/111+19319632..19321821expressed protein
LOC_Os01g34450Os.36927.2.S1_x_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.3.S1_at9/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.2.S1_x_at4/111+19319632..19321821expressed protein
LOC_Os01g34460OsAffx.9057.3.S1_at11/111+19331291..19331875hypothetical protein
LOC_Os01g34470NANA1+19332274..19333839expressed protein
LOC_Os01g34480Os.11827.1.S1_a_at11/111+19336555..19341007NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g34490NANA1+19343199..19347398retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009094biological_processL-phenylalanine biosynthesis
GO:0004664molecular_functionprephenate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29486.3.S1_at--68--3491Chr01:19321345..19321369 (25 bp)
CAGGAGTTCCCTTGAAATATGCAGG
LOC_Os01g34450
OsAffx.29486.3.S1_at--1104--6051Chr01:19321348..19321372 (25 bp)
GAGTTCCCTTGAAATATGCAGGGCA
LOC_Os01g34450
OsAffx.29486.3.S1_at--456--231Chr01:19321361..19321385 (25 bp)
ATATGCAGGGCAAACATGACTGTTT
LOC_Os01g34450
OsAffx.29486.3.S1_at--193--691Chr01:19321376..19321400 (25 bp)
ATGACTGTTTTTAATGACATGCACG
LOC_Os01g34450
OsAffx.29486.3.S1_at--833--6811Chr01:19321382..19321406 (25 bp)
GTTTTTAATGACATGCACGTATCTG
LOC_Os01g34450
OsAffx.29486.3.S1_at--462--5651Chr01:19321391..19321415 (25 bp)
GACATGCACGTATCTGTAAATGACA
LOC_Os01g34450
OsAffx.29486.3.S1_at--21--5111Chr01:19321396..19321420 (25 bp)
GCACGTATCTGTAAATGACAAGCTA
LOC_Os01g34450
OsAffx.29486.3.S1_at--1158--6891Chr01:19321400..19321424 (25 bp)
GTATCTGTAAATGACAAGCTATTAG
LOC_Os01g34450
OsAffx.29486.3.S1_at--143--2711Chr01:19321415..19321439 (25 bp)
AAGCTATTAGATGTCGCAGGAGCCG
LOC_Os01g34450
OsAffx.29486.3.S1_at--79--3671NONE
CTTTTAGTTTCTGCATGCACCTCGT
NONE
OsAffx.29486.3.S1_at--827--10431NONE
TTAGTTTCTGCATGCACCTCGTCAT
NONE
Target Sequence 
CAGGAGTTCCCTTGAAATATGCAGGGCAAACATGACTGTTTTTAATGACATGCACGTATCTGTAAATGACAAGCTATTAG
ATGTCGCAGGAGCCGGGGAAAAGCTGCAGGCCAACATCAGAATTGCATCTGGGATGACGAGGATATTAGCTATTTTTTTG
GGACCCTGGATCCAAAGGATCAATGGTGCAGAAGGCATTCCACCCACAATGAGAATCGCTTTTAGTTTCTGCATGCACCT
CGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29486.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis