Browse Element(s) Details


OsAffx.29551.1.S1_at

Description tigr:9636.m03637
TID=OsAffx.29551.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3615011/11Aha1 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36110Os.50773.1.S1_at11/118+22621961..22623196expressed protein
LOC_Os08g36120OsAffx.20484.2.S1_at11/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36120OsAffx.20484.1.S1_x_at2/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36130OsAffx.447.1.S1_at1/118+22630037..22634586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36140Os.21784.1.S1_at11/118+22640134..22642316expressed protein
LOC_Os08g36150OsAffx.29551.1.S1_at11/118+22644276..22648424Aha1 domain-containing protein, putative, expressed
LOC_Os08g36150Os.8027.1.S1_at9/118+22644276..22648424Aha1 domain-containing protein, putative, expressed
LOC_Os08g36160OsAffx.22947.5.S1_x_at3/118+22650615..22656123retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36160OsAffx.23640.2.S1_at1/118+22650615..22656123retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29551.1.S1_at--240--4051Chr08:22646770..22646793 (24 bp)
CGAGGTTGGAACTGACTTCGTCAAA
LOC_Os08g36150
OsAffx.29551.1.S1_at--136--3291Chr08:22646749..22646773 (25 bp)
CAAATTCCCTTTCTGACCATGTCAT
LOC_Os08g36150
OsAffx.29551.1.S1_at--372--8931Chr08:22646736..22646760 (25 bp)
TGACCATGTCATCCCTGATTTAGCA
LOC_Os08g36150
OsAffx.29551.1.S1_at--413--10731Chr08:22646696..22646716 (21 bp)
TTGCAGCATTTCAGGCAGCGGCATG
LOC_Os08g36150
OsAffx.29551.1.S1_at--183--651Chr08:22646076..22646100 (25 bp)
ATGCACCACCTCTGCATTGGGAACA
LOC_Os08g36150
OsAffx.29551.1.S1_at--1071--8391Chr08:22646042..22646066 (25 bp)
GGCGCTGTTTTCATGGTCGGTGACT
LOC_Os08g36150
OsAffx.29551.1.S1_at--1099--9471Chr08:22646018..22646042 (25 bp)
TCTGCACCGGGAACATGGCACTATG
LOC_Os08g36150
OsAffx.29551.1.S1_at--607--10371Chr08:22645969..22645993 (25 bp)
TTTTCACTTGCCACTTGTCGATGGA
LOC_Os08g36150
OsAffx.29551.1.S1_at--518--9091Chr08:22645926..22645950 (25 bp)
TGCTCCTGTCGGTGGTGTCTGTGAA
LOC_Os08g36150
OsAffx.29551.1.S1_at--829--9591Chr08:22645866..22645890 (25 bp)
TCATAGCGGCGAGGTGTCCTTCAAG
LOC_Os08g36150
OsAffx.29551.1.S1_at--225--8711Chr08:22645852..22645876 (25 bp)
TGTCCTTCAAGCTCTCACTGCATGA
LOC_Os08g36150
Target Sequence 
CGAGGTTGGAACTGACTTCGTCAAATTCCCTTTCTGACCATGTCATCCCTGATTTAGCATTTGGAGGTTGCTGTGATTTT
GCAGCATTTCAGGCAGCGGCATGCACCACCTCTGCATTGGGAACACGGCAGTGGGGCGCTGTTTTCATGGTCGGTGACTC
TGCACCGGGAACATGGCACTATGCCACCGTCTTCTTGGGTGGCTCCATTTTCACTTGCCACTTGTCGATGGACGGCGTTG
GAGCTGGAGCTGCTCCTGTCGGTGGTGTCTGTGAATGCCGCCTCTCTCTGCGCCTCCCTCTCCTCCGCGCTCATAGCGGC
GAGGTGTCCTTCAAGCTCTCACTGCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis