Browse Element(s) Details


OsAffx.29574.1.S1_at

Description tigr:9636.m03786
TID=OsAffx.29574.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3768011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37610Os.20672.1.S2_at11/118+23701456..23711645expressed protein
LOC_Os08g37610Os.20672.1.S1_s_at10/118+23701456..23711645expressed protein
LOC_Os08g37620OsAffx.6060.1.S1_at11/118+23712144..23712565hypothetical protein
LOC_Os08g37630NANA8+23715005..23715598expressed protein
LOC_Os08g37640OsAffx.29573.1.S1_at11/118+23716817..23717281hypothetical protein
LOC_Os08g37650Os.12071.2.S1_at11/118+23717518..23720058expressed protein
LOC_Os08g37660Os.37571.1.S1_at11/118+23720379..23721523Plastocyanin-like domain containing protein, expressed
LOC_Os08g37670Os.609.3.S1_a_at11/118+23725870..23727278Plastocyanin-like domain containing protein, expressed
LOC_Os08g37680OsAffx.29574.1.S1_at11/118+23727999..23728268hypothetical protein
LOC_Os08g37690Os.53766.1.S1_at11/118+23737020..23738267expressed protein
LOC_Os08g37700Os.27730.1.S1_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700Os.27730.1.S2_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700OsAffx.30842.1.S1_at1/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37710OsAffx.17382.1.S1_at11/118+23747753..23750195expressed protein
LOC_Os08g37720Os.33678.1.S1_x_at11/118+23750989..23753644expressed protein
LOC_Os08g37720Os.53903.1.S1_at11/118+23750989..23753644expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29574.1.S1_at--66--6111Chr08:23728214..23728238 (25 bp)
GAGTCCCTCGTCAACGTTGTTTCCA
LOC_Os08g37680
OsAffx.29574.1.S1_at--141--9331Chr08:23728207..23728231 (25 bp)
TCGTCAACGTTGTTTCCACGTCCGT
LOC_Os08g37680
OsAffx.29574.1.S1_at--1139--9531Chr08:23728204..23728228 (25 bp)
TCAACGTTGTTTCCACGTCCGTTGC
LOC_Os08g37680
OsAffx.29574.1.S1_at--613--6611Chr08:23728199..23728223 (25 bp)
GTTGTTTCCACGTCCGTTGCCGACG
LOC_Os08g37680
OsAffx.29574.1.S1_at--415--1651Chr08:23728155..23728179 (25 bp)
AGCCCTGCCCGGCTCGACAATTGAT
LOC_Os08g37680
OsAffx.29574.1.S1_at--37--9171Chr08:23728150..23728174 (25 bp)
TGCCCGGCTCGACAATTGATGACGC
LOC_Os08g37680
OsAffx.29574.1.S1_at--1055--4251Chr08:23728147..23728171 (25 bp)
CCGGCTCGACAATTGATGACGCCAT
LOC_Os08g37680
OsAffx.29574.1.S1_at--1155--3771Chr08:23728143..23728167 (25 bp)
CTCGACAATTGATGACGCCATGGCC
LOC_Os08g37680
OsAffx.29574.1.S1_at--626--4411Chr08:23728127..23728151 (25 bp)
GCCATGGCCAAGACGGTCACCGACT
LOC_Os08g37680
OsAffx.29574.1.S1_at--68--4531Chr08:23728100..23728124 (25 bp)
GCCGCTGATCGACAGGGCATCCGCC
LOC_Os08g37680
OsAffx.29574.1.S1_at--645--7011Chr08:23728064..23728088 (25 bp)
GTACATGCTGCCCTCAAACAGCACC
LOC_Os08g37680
Target Sequence 
GAGTCCCTCGTCAACGTTGTTTCCACGTCCGTTGCCGACGCCGTCCGCGCGTCTTACCAAGCCCTGCCCGGCTCGACAAT
TGATGACGCCATGGCCAAGACGGTCACCGACTCCGCCGCTGATCGACAGGGCATCCGCCGCCGACCCGCCGTACATGCTG
CCCTCAAACAGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis