Browse Element(s) Details


OsAffx.2962.1.S1_at

Description tigr:9630.m04375
TID=OsAffx.2962.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4514010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45090Os.9264.1.S1_at11/112+27346205..27351144expressed protein
LOC_Os02g45100Os.56106.1.S1_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45100Os.56106.1.S2_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45110Os.20898.1.S1_at11/112+27354548..27359890N6-adenosine-methyltransferase MT-A70, putative, expressed
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed
LOC_Os02g45140OsAffx.2962.1.S1_at10/112+27372081..27373796hypothetical protein
LOC_Os02g45150Os.55719.1.S1_at11/112+27381057..27383071expressed protein
LOC_Os02g45150Os.50517.1.S1_at2/112+27381057..27383071expressed protein
LOC_Os02g45160Os.8276.1.S1_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45160Os.8276.1.S2_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2962.1.S1_at--794--1291NONE
AGAGCGCGGGTGTTACAGTCTACCT
NONE
OsAffx.2962.1.S1_at--543--5111Chr02:27372346..27372370 (25 bp)
GCACTCTATGGCTTCATGGGAAACT
LOC_Os02g45140
OsAffx.2962.1.S1_at--322--8091Chr02:27372296..27372320 (25 bp)
GGACCAAATGTAGCCATCGCTTGTG
LOC_Os02g45140
OsAffx.2962.1.S1_at--416--3911Chr02:27372263..27372287 (25 bp)
CTGGATGGGATGTGCTATCAGCCTA
LOC_Os02g45140
OsAffx.2962.1.S1_at--153--10151Chr02:27372248..27372272 (25 bp)
TATCAGCCTATAACTTTGGCCGGCA
LOC_Os02g45140
OsAffx.2962.1.S1_at--352--10211Chr02:27372234..27372258 (25 bp)
TTTGGCCGGCAATATGTTCACATAT
LOC_Os02g45140
OsAffx.2962.1.S1_at--400--251Chr02:27372213..27372237 (25 bp)
ATATCCTCTTCACCTATCTCGAATT
LOC_Os02g45140
OsAffx.2962.1.S1_at--422--3151Chr02:27372192..27372216 (25 bp)
AATTCATTGTCACCTCCCTGATGGA
LOC_Os02g45140
OsAffx.2962.1.S1_at--871--1811Chr02:27372148..27372172 (25 bp)
ACGCCTTGAGGAAACATGTGGTCGC
LOC_Os02g45140
OsAffx.2962.1.S1_at--335--8591Chr02:27372130..27372154 (25 bp)
TGGTCGCCATGTCCCAAGTTACCAA
LOC_Os02g45140
OsAffx.2962.1.S1_at--734--1211Chr02:27372114..27372138 (25 bp)
AGTTACCAACAACGGATGCTCGTTT
LOC_Os02g45140
Target Sequence 
AGAGCGCGGGTGTTACAGTCTACCTTGGCACCTCCAACTCCAAGCACTCTATGGCTTCATGGGAAACTGCACTTAGAAAA
TGCACAACATGGAGGACCAAATGTAGCCATCGCTTGTGGAGATGAACTGGATGGGATGTGCTATCAGCCTATAACTTTGG
CCGGCAATATGTTCACATATCCTCTTCACCTATCTCGAATTCATTGTCACCTCCCTGATGGACACAACTTCAACAATACT
GACGCCTTGAGGAAACATGTGGTCGCCATGTCCCAAGTTACCAACAACGGATGCTCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis