Browse Element(s) Details


OsAffx.29654.1.S1_at

Description tigr:9636.m04490
TID=OsAffx.29654.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4406011/11hypothetical protein
LOC_Os08g441109/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44020Os.50320.1.S1_at11/118+27581198..27585830LG27/30-like gene, putative, expressed
LOC_Os08g44030OsAffx.29653.1.S1_at11/118+27587099..27587425hypothetical protein
LOC_Os08g44040Os.50320.1.S1_at4/118+27591651..27598426LG27/30-like gene, putative, expressed
LOC_Os08g44050Os.21255.1.S1_x_at11/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.21255.3.S1_x_at2/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.2.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.3.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44060OsAffx.29654.1.S1_at11/118+27609700..27609912hypothetical protein
LOC_Os08g44070OsAffx.17511.1.S1_at11/118+27623463..27623981expressed protein
LOC_Os08g44080OsAffx.29655.1.S1_at11/118+27626739..27627500hypothetical protein
LOC_Os08g44090Os.10947.1.S1_at11/118+27629093..27633020Endomembrane protein 70 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29654.1.S1_at--561--9252Chr08:27609839..27609863 (25 bp)
TCCTCATCATGGTGGCAAGGGCGCA
LOC_Os08g44060
OsAffx.29654.1.S1_at--508--412Chr08:27609834..27609858 (25 bp)
ATCATGGTGGCAAGGGCGCACCCTC
LOC_Os08g44060
OsAffx.29654.1.S1_at--514--1812Chr08:27609815..27609839 (25 bp)
ACCCTCCTCGCGCTGTTTGTTGTCA
LOC_Os08g44060
OsAffx.29654.1.S1_at--426--9331Chr08:27609808..27609832 (25 bp)
TCGCGCTGTTTGTTGTCATCTTCCT
LOC_Os08g44060
OsAffx.29654.1.S1_at--13--9272Chr08:27642977..27643001 (25 bp)
TCCTCGTGGTGGTCTTGGTGACAAT
LOC_Os08g44110
OsAffx.29654.1.S1_at--963--9412Chr08:27642974..27642998 (25 bp)
TCGTGGTGGTCTTGGTGACAATGTT
LOC_Os08g44110
OsAffx.29654.1.S1_at--259--8612Chr08:27609772..27609796 (25 bp)
TGGTGACAATGTTGGCGCTGGAGGT
LOC_Os08g44060
OsAffx.29654.1.S1_at--190--6952Chr08:27642933..27642957 (25 bp)
GTAGAAGCGGCGTCCATGGAAAGCC
LOC_Os08g44110
OsAffx.29654.1.S1_at--267--1632Chr08:27642928..27642952 (25 bp)
AGCGGCGTCCATGGAAAGCCGGCTT
LOC_Os08g44110
OsAffx.29654.1.S1_at--961--8352Chr08:27609735..27609759 (25 bp)
GGCGTCCATGGAAAGCCGGCTTCTC
LOC_Os08g44060
OsAffx.29654.1.S1_at--771--3992Chr08:27609733..27609757 (25 bp)
CGTCCATGGAAAGCCGGCTTCTCGA
LOC_Os08g44060
Target Sequence 
TCCTCATCATGGTGGCAAGGGCGCACCCTCCTCGCGCTGTTTGTTGTCATCTTCCTCGTGGTGGTCTTGGTGACAATGTT
GGCGCTGGAGGTGGTGGTAGAAGCGGCGTCCATGGAAAGCCGGCTTCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis