Browse Element(s) Details


OsAffx.29664.1.S1_at

Description tigr:9636.m04586
TID=OsAffx.29664.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4496011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44910Os.56660.1.S1_x_at11/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44910Os.44316.2.S1_x_at1/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44920NANA8+28071867..28072418retrotransposon protein, putative, unclassified
LOC_Os08g44930Os.18686.1.S1_at11/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44930Os.8522.1.S1_at1/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44940OsAffx.17516.1.S1_at11/118+28079882..28080921LOB domain protein 29, putative
LOC_Os08g44950OsAffx.17517.1.S1_at11/118+28087470..28088195Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g44960OsAffx.29664.1.S1_at11/118+28091477..28091887AP2 domain containing protein, expressed
LOC_Os08g44970Os.10827.1.S1_x_at11/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44970Os.46055.2.S1_x_at5/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44980NANA8+28098638..28098910hypothetical protein
LOC_Os08g44990OsAffx.25936.7.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_at6/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.2.S1_x_at5/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.5.S1_x_at1/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g45000Os.50055.1.S1_at11/118+28111359..28113185phosphate:H+ symporter family protein, expressed
LOC_Os08g45000OsAffx.11592.1.S1_x_at1/118+28111359..28113185phosphate:H+ symporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29664.1.S1_at--545--5991Chr08:28091528..28091552 (25 bp)
GAGACGACCAAGTACCGTGGCGTGC
LOC_Os08g44960
OsAffx.29664.1.S1_at--155--9151Chr08:28091550..28091574 (25 bp)
TGCGTCGCCGGCCTTCTGGCAAGTT
LOC_Os08g44960
OsAffx.29664.1.S1_at--931--6031Chr08:28091582..28091606 (25 bp)
GAGATCCGTGACTCCAGCAGGCAGA
LOC_Os08g44960
OsAffx.29664.1.S1_at--693--1991Chr08:28091592..28091616 (25 bp)
ACTCCAGCAGGCAGAGCGTCCGCGT
LOC_Os08g44960
OsAffx.29664.1.S1_at--601--4751Chr08:28091714..28091738 (25 bp)
GCTGAGGCGCGCAACTACGTGCGGG
LOC_Os08g44960
OsAffx.29664.1.S1_at--640--6391Chr08:28091785..28091809 (25 bp)
GATCGAGCTGGAGTGCCTAGACGAC
LOC_Os08g44960
OsAffx.29664.1.S1_at--611--6111Chr08:28091795..28091819 (25 bp)
GAGTGCCTAGACGACCAAGTGCTGC
LOC_Os08g44960
OsAffx.29664.1.S1_at--125--4431Chr08:28091799..28091823 (25 bp)
GCCTAGACGACCAAGTGCTGCAAGA
LOC_Os08g44960
OsAffx.29664.1.S1_at--162--5771Chr08:28091804..28091828 (25 bp)
GACGACCAAGTGCTGCAAGAGATGC
LOC_Os08g44960
OsAffx.29664.1.S1_at--197--631Chr08:28091825..28091849 (25 bp)
ATGCTCAAGGGTGGCGACGATCAGT
LOC_Os08g44960
OsAffx.29664.1.S1_at--861--9711Chr08:28091829..28091853 (25 bp)
TCAAGGGTGGCGACGATCAGTACAG
LOC_Os08g44960
Target Sequence 
GAGACGACCAAGTACCGTGGCGTGCGTCGCCGGCCTTCTGGCAAGTTCGCGGCGGAGATCCGTGACTCCAGCAGGCAGAG
CGTCCGCGTCTGGCTGGGAACCTTCGACACCGCCGAGGAGGCTGCGCGGGCTTACGACCGCGCCGCCTACGCCATGCGCG
GCCACCTCGCCGTCCTCAACTTCCCTGCTGAGGCGCGCAACTACGTGCGGGGATCAGGCTCGTCGTCCTCGTCCCGACAG
CATCAGCAGCGGCAGGTGATCGAGCTGGAGTGCCTAGACGACCAAGTGCTGCAAGAGATGCTCAAGGGTGGCGACGATCA
GTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis