Browse Element(s) Details


OsAffx.29724.2.S1_x_at

Description tigr:9638.m01864
TID=OsAffx.29724.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2214011/11hypothetical protein
LOC_Os12g230304/11hypothetical protein
LOC_Os02g473403/11hypothetical protein
LOC_Os02g247802/11hypothetical protein
LOC_Os02g240902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22090OsAffx.30493.1.S1_at11/1110+11077961..11078332hypothetical protein
LOC_Os10g22100Os.15513.1.S1_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100Os.15513.2.S1_x_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100OsAffx.8217.1.S1_x_at6/1110+11082931..11085694expressed protein
LOC_Os10g22110OsAffx.20446.1.S1_at11/1110+11087332..11089941hypothetical protein
LOC_Os10g22130OsAffx.29724.1.S1_x_at11/1110+11096351..11101516hypothetical protein
LOC_Os10g22130OsAffx.29724.3.S1_x_at2/1110+11096351..11101516hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_x_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_at3/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_x_at2/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.20673.1.S1_x_at1/1110+11108438..11108830hypothetical protein
LOC_Os10g22160OsAffx.8215.1.S1_at11/1110+11114208..11114690retrotransposon protein, putative, unclassified
LOC_Os10g22164Os.35344.3.S1_x_at8/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164Os.35344.18.S1_x_at7/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_x_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22170Os.46889.1.S1_at11/1110+11128950..11132739expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29724.2.S1_x_at--1141--531Chr10:11103609..11103633 (25 bp)
ATCCCAGGTTGCTGCAATTTGGTTA
LOC_Os10g22140
OsAffx.29724.2.S1_x_at--1146--2571Chr10:11103426..11103548 (25 bp)
AAGCCCTGTTACATCCAAATTCCGT
LOC_Os10g22140
OsAffx.29724.2.S1_x_at--241--5491Chr10:11103384..11103408 (25 bp)
GAACATTGTGAGACATCAACTTTAG
LOC_Os10g22140
OsAffx.29724.2.S1_x_at--324--3235Chr12:13018244..13018268 (25 bp)
CAAGTTTGTCACAGCGAGGGAGTAC
LOC_Os12g23030
OsAffx.29724.2.S1_x_at--628--2071Chr10:11103082..11103106 (25 bp)
ACATCATTTTGTTTGGAGGACGACT
LOC_Os10g22140
OsAffx.29724.2.S1_x_at--837--3191Chr10:11103050..11103074 (25 bp)
CAATGGGTTGTTGCCATGTACATCA
LOC_Os10g22140
OsAffx.29724.2.S1_x_at--1049--6172Chr12:13018112..13018136 (25 bp)
GAGGCTCGATTGGTACTCAAAACCT
LOC_Os12g23030
OsAffx.29724.2.S1_x_at--707--2814Chr12:13018075..13018099 (25 bp)
AAGATTCGGGCTGAGCTATACCAGG
LOC_Os12g23030
OsAffx.29724.2.S1_x_at--989--5752Chr10:11102844..11102868 (25 bp)
GACGTGCTTTCTTCTGGAGAGACAA
LOC_Os10g22140
OsAffx.29724.2.S1_x_at--228--1411Chr10:11102825..11102849 (25 bp)
AGACAAGCGGTTTGGCAGTTGGTAA
LOC_Os10g22140
OsAffx.29724.2.S1_x_at--1057--9773Chr12:13017903..13017927 (25 bp)
TAAGAGGGTTGTGCTACCTCGATCT
LOC_Os12g23030
Target Sequence 
ATCCCAGGTTGCTGCAATTTGGTTAGAGGGGGATAATCCAATGAGAACTTTTGATAGACATGTCTTGGTACATGCAAAAG
GTGATAAGCCCTGTTACATCCAAATTCCGTGTGATGTGGAAATGGATGAACATTGTGAGACATCAACTTTAGGTGATGTA
CGTACCAACGAAGAAAGCACTTTTGATGATCTTCCGGAGAACGAGGTTGTTGACAATTATCTAGACAATGAAGATGATAA
TGACGATAGTAGTAAATCTGGCAAAGGGAAAAAGGACAAGTTTGTCACAGCGAGGGAGTACTATTGCTTCAGGCTGCAGT
TTAGAAGGGGACTTCTAAACATCATTTTGTTTGGAGGACGACTTTTCCAACAATGGGTTGTTGCCATGTACATCAAAATC
GAGTCTATGAGGCTCGATTGGTACTCAAAACCTGAGAACCAAAAAAAGATTCGGGCTGAGCTATACCAGGGTGTGGTTGA
CGTGCTTTCTTCTGGAGAGACAAGCGGTTTGGCAGTTGGTAAGAGGGTTGTGCTACCTCGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29724.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis