Browse Element(s) Details


OsAffx.29773.1.S1_s_at

Description tigr:9637.m00672
TID=OsAffx.29773.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0921011/11expressed protein
LOC_Os07g024301/11expressed protein
LOC_Os07g041201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09170OsAffx.8939.1.S1_x_at5/119+4909504..4909958hypothetical protein
LOC_Os09g09170OsAffx.8939.1.S1_at4/119+4909504..4909958hypothetical protein
LOC_Os09g09170OsAffx.9036.1.S1_at1/119+4909504..4909958hypothetical protein
LOC_Os09g09180NANA9+4913542..4914021hypothetical protein
LOC_Os09g09190Os.24831.3.S1_s_at9/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.24831.1.S1_x_at6/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.24831.3.S1_x_at4/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.55127.1.S1_at1/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.24831.4.S1_x_at1/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09200Os.53142.1.S1_at2/119+4921538..4922698transposon protein, putative, unclassified
LOC_Os09g09200Os.46314.2.S1_x_at1/119+4921538..4922698transposon protein, putative, unclassified
LOC_Os09g09210OsAffx.29773.1.S1_s_at11/119+4928367..4931323expressed protein
LOC_Os09g09210OsAffx.29773.1.S1_at11/119+4928367..4931323expressed protein
LOC_Os09g09220OsAffx.17610.1.S1_at11/119+4932507..4941200Protein kinase domain containing protein, expressed
LOC_Os09g09230OsAffx.17611.1.S1_at11/119+4942208..4942863cinnamoyl CoA reductase, putative
LOC_Os09g09240NANA9+4948220..4954135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09250OsAffx.21897.5.S1_x_at4/119+4954357..4957281retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29773.1.S1_s_at--421--1357Chr08:16618826..16618850 (25 bp)
AGAGTTCCTCAGATTCAATGACGAA
NONE
OsAffx.29773.1.S1_s_at--876--7371Chr09:4928736..4928760 (25 bp)
GTGACGCTTACACCAATATCTTCGG
LOC_Os09g09210
OsAffx.29773.1.S1_s_at--714--3112Chr09:4928722..4928746 (25 bp)
AATATCTTCGGCTCAGCAATCAACC
LOC_Os09g09210
OsAffx.29773.1.S1_s_at--84--10255Chr08:16618963..16618984 (22 bp)
TTTGTCAAGCGGTGTGCACTTCTCA
NONE
OsAffx.29773.1.S1_s_at--1132--9651Chr09:4928629..4928653 (25 bp)
TCACGAGGCCCATGGTAGCAGTCGA
LOC_Os09g09210
OsAffx.29773.1.S1_s_at--1147--8471Chr09:4928586..4928610 (25 bp)
TGGCTTTGCAGTAGTCACGACTCAC
LOC_Os09g09210
OsAffx.29773.1.S1_s_at--968--10851Chr09:4928525..4928549 (25 bp)
TTGGTTTCATCTGGAAGGCTGCTTC
LOC_Os09g09210
OsAffx.29773.1.S1_s_at--1104--891Chr09:4928510..4928534 (25 bp)
AGGCTGCTTCCGTAGTTTGGTTCAC
LOC_Os09g09210
OsAffx.29773.1.S1_s_at--555--3471Chr09:4928475..4928499 (25 bp)
CAGGGTTGTCCCTTTTGCTTTCAAT
LOC_Os09g09210
OsAffx.29773.1.S1_s_at--312--3132Chr09:4928453..4928477 (25 bp)
AATTTCTATCTTTGGTTGTGTACTG
LOC_Os09g09210
OsAffx.29773.1.S1_s_at--481--4191Chr09:4928419..4928443 (25 bp)
CCCTAACTCTGTCCTTGCTTAATAA
LOC_Os09g09210
Target Sequence
AGAGTTCCTCAGATTCAATGACGAACCTCGTGGGGATTCTTTGTTGAGTCAGGTGACGCTTACACCAATATCTTCGGCTC
AGCAATCAACCTCGATCTGGTGCCGTTCCCGTGGAGGCAACCGAAGGGGATTAACGGTTTGTCAAGCGGTGTGCACTTCT
CACGAGGCCCATGGTAGCAGTCGACGCGGTTTTAAGACGTTGTGGCTTTGCAGTAGTCACGACTCACCGCAGCTCCCTAT
CGGCTTGCTCCTTTTTCTGCTGTTTGGTTTCATCTGGAAGGCTGCTTCCGTAGTTTGGTTCACCCTCTCTTTTCAGGGTT
GTCCCTTTTGCTTTCAATTTCTATCTTTGGTTGTGTACTGGGGTTTATCCCCTAACTCTGTCCTTGCTTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29773.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis