Browse Element(s) Details


OsAffx.29842.1.S1_at

Description tigr:9633.m03706
TID=OsAffx.29842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3979011/11transposon protein, putative, unclassified
LOC_Os08g155101/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39760Os.9908.1.S1_at11/115+23268719..23273322VHS domain containing protein, expressed
LOC_Os05g39770Os.15830.1.S1_at11/115+23272136..23276828Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed
LOC_Os05g39780Os.38395.3.S1_x_at10/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.2.S1_x_at8/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.4.S1_x_at6/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.1.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.5.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39790OsAffx.29842.1.S1_at11/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.2.S1_x_at5/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.3.S1_x_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.2.S1_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.3.S1_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39800Os.18913.1.S1_x_at11/115+23303526..23306003Nodulin-like family protein, expressed
LOC_Os05g39800Os.18913.2.S1_at6/115+23303526..23306003Nodulin-like family protein, expressed
LOC_Os05g39810NANA5+23306628..23309946retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29842.1.S1_at--172--412Chr08:9428713..9428737 (25 bp)
ATCAGATCGATACTCCTCATTGTGT
LOC_Os08g15510
OsAffx.29842.1.S1_at--330--1251Chr05:23292031..23292055 (25 bp)
AGATTTAGACAAGTCGCCTTCCCCA
LOC_Os05g39790
OsAffx.29842.1.S1_at--1146--3491Chr05:23291861..23291885 (25 bp)
CATGGTTCAGCTAGACGTGTTGGTG
LOC_Os05g39790
OsAffx.29842.1.S1_at--984--4051Chr05:23291790..23291814 (25 bp)
CGATGTTCCGGACCATGTGCTAGAA
LOC_Os05g39790
OsAffx.29842.1.S1_at--208--4871Chr05:23291772..23291796 (25 bp)
GCTAGAACCACAACCTGAGATGCAG
LOC_Os05g39790
OsAffx.29842.1.S1_at--419--3371Chr05:23291653..23291764 (25 bp)
CACCTGCTACAGTAATGGGCCATCT
LOC_Os05g39790
OsAffx.29842.1.S1_at--850--8651Chr05:23291638..23291661 (24 bp)
TGGGCCATCTGGAGGTTCCTAGCAA
LOC_Os05g39790
OsAffx.29842.1.S1_at--497--7011Chr05:23291589..23291613 (25 bp)
GTACTATGCTGCTCTGGAAGCGTCA
LOC_Os05g39790
OsAffx.29842.1.S1_at--659--7092Chr09:8300961..8300985 (25 bp)
GTCAACACACCCTTTATTTCATACT
NONE
OsAffx.29842.1.S1_at--699--9912Chr09:8300940..8300964 (25 bp)
TACTCCTATCTCAGTGACTCCAGAA
NONE
OsAffx.29842.1.S1_at--264--9031Chr05:23291512..23291536 (25 bp)
TGCACCAAGGGAGGCCATTTCAACA
LOC_Os05g39790
Target Sequence 
ATCAGATCGATACTCCTCATTGTGTAGAATGTTTGTTCGAATAGCTTCTACAGCTGCAAAATCTGAAGAAACATACTCCA
TGTCTACTAATTGTGCTGAAAAATTGGCAGAAGATATAGAGAAGTTCTTGAGAATCAGAAGTGATCCAGATTTAGACAAG
TCGCCTTCCCCACAAGTTGGGAAAGAAAATCAGATGCCCAAAAAGCCAAGAGGCATTAAGCTCAAGGAAAAGGGCATCCA
TGGTTCAGCTAGACGTGTTGGTGGCTTAGAGAAAGCATCATCGCAGAGGAAGAGAAAGAAGAAGGATGACGATGTTCCGG
ACCATGTGCTAGAACCACAACCTGAGATGCAGTCACAACCACCTGCTACAGTAATGGGCCATCTGGAGGTTCCTAGCAAC
CAAACTTTTTTACATGTATCACAGTACTATGCTGCTCTGGAAGCGTCAACACACCCTTTATTTCATACTCCTATCTCAGT
GACTCCAGAAAGTCAGGGGCTGCACCAAGGGAGGCCATTTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis