Browse Element(s) Details


OsAffx.29863.1.S1_at

Description tigr:9637.m01316
TID=OsAffx.29863.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1583010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15770Os.8401.1.S1_a_at11/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15770Os.8401.1.S1_at8/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15780OsAffx.29861.1.S1_at11/119+9637865..9641416expressed protein
LOC_Os09g15790Os.53227.1.S1_at11/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790Os.57489.1.S1_x_at1/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800OsAffx.29862.1.S1_at11/119+9646716..9649346pentatricopeptide, putative
LOC_Os09g15810Os.7067.1.S1_at11/119+9651208..9653971Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed
LOC_Os09g15830OsAffx.29863.1.S1_at10/119+9660772..9661911hypothetical protein
LOC_Os09g15840Os.57109.1.S1_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_x_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_at10/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840OsAffx.17950.1.S1_at8/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.24761.1.A1_at3/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.5.S1_x_at1/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15850OsAffx.6289.1.S1_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.1.A1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.2.S1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29863.1.S1_at--429--8351Chr09:9661539..9661563 (25 bp)
GGCGGCGAAGGCAACGACACCAAGA
LOC_Os09g15830
OsAffx.29863.1.S1_at--396--4591Chr09:9661535..9661559 (25 bp)
GCGAAGGCAACGACACCAAGATCTC
LOC_Os09g15830
OsAffx.29863.1.S1_at--1059--9231Chr09:9661506..9661530 (25 bp)
TCCGGGTTCCCGAGGTCGCGCCTGT
LOC_Os09g15830
OsAffx.29863.1.S1_at--30--971Chr09:9661445..9661469 (25 bp)
AGGACGGGCTCAAGAGCCTTGCCAC
LOC_Os09g15830
OsAffx.29863.1.S1_at--992--1651NONE
AGCGCGGACGGCGTTCCAGGGAACG
NONE
OsAffx.29863.1.S1_at--20--5451Chr09:9661132..9661156 (25 bp)
GAACGCGCGCGACGAGCCGGTCCTG
LOC_Os09g15830
OsAffx.29863.1.S1_at--534--7571Chr09:9660977..9661001 (25 bp)
GGGCGAGGCGGTGCCTGCGCGCGCT
LOC_Os09g15830
OsAffx.29863.1.S1_at--906--2171Chr09:9660932..9660956 (25 bp)
ACACGGAGGCGGCACCGAAGCCGAA
LOC_Os09g15830
OsAffx.29863.1.S1_at--116--4811Chr09:9660884..9660908 (25 bp)
GCTCGTGCCGGTTCCAGTGCGTCGC
LOC_Os09g15830
OsAffx.29863.1.S1_at--467--6691Chr09:9660874..9660898 (25 bp)
GTTCCAGTGCGTCGCGGATCACAAG
LOC_Os09g15830
OsAffx.29863.1.S1_at--246--7311Chr09:9660868..9660892 (25 bp)
GTGCGTCGCGGATCACAAGCCGCCG
LOC_Os09g15830
Target Sequence 
GGCGGCGAAGGCAACGACACCAAGATCTCCATCTCCGGGTTCCCGAGGTCGCGCCTGTTCGACGGCGCGCGCGCGCCGTA
CCGGCGGGAGATCGAGGACGGGCTCAAGAGCCTTGCCACCCGCGGCCGCGAGGCGCCGGCGGCGAGCGCGGACGGCGTTC
CAGGGAACGCGCGCGACGAGCCGGTCCTGGTGGCGCCGCCGAAAAAGCAGCAGGAAGAAGAGCAGCCCAAGGAGCCGGTG
CCGGTGCGGAGGCCGCCGATCGCCGTGCCAGCAGCGCCGCAGCCGGAGANCCGCGTGGCGCCGCCGCCGCCGCCGCCGAG
GGCGAGGCGGTGCCTGCGCGCGCTGATGATGGAGAGCGGGAGCGACACGGAGGCGGCACCGAAGCCGAAGACGAAGCCAA
AGCCGAAGCCGAGCTCGTGCCGGTTCCAGTGCGTCGCGGATCACAAGCCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis