Browse Element(s) Details


OsAffx.2988.1.S1_at

Description tigr:9630.m04601
TID=OsAffx.2988.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4730011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47280Os.49748.1.S1_at11/112+28857405..28861128growth-regulating factor, putative, expressed
LOC_Os02g47280OsAffx.2987.1.S1_at7/112+28857405..28861128growth-regulating factor, putative, expressed
LOC_Os02g47290OsAffx.24763.1.S1_at11/112+28869364..28870848hypothetical protein
LOC_Os02g47300OsAffx.2988.1.S1_at11/112+28881319..28881959hypothetical protein
LOC_Os02g47310Os.15731.1.S1_at11/112+28888196..28891679Tocopherol O-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47320Os.52590.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320Os.4730.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320OsAffx.24764.1.S1_at10/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47330NANA2+28895716..28896078expressed protein
LOC_Os02g47340OsAffx.29724.3.S1_x_at11/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.6.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.1.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.2.S1_x_at3/112+28897987..28903844hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2988.1.S1_at--578--8631Chr02:28881354..28881378 (25 bp)
TGGGTGCAGCGCAAAGTGGCCACTT
LOC_Os02g47300
OsAffx.2988.1.S1_at--619--2311Chr02:28881366..28881390 (25 bp)
AAAGTGGCCACTTGACCAGTTCTCA
LOC_Os02g47300
OsAffx.2988.1.S1_at--376--1731Chr02:28881380..28881404 (25 bp)
ACCAGTTCTCATGTGCCTGGAAACT
LOC_Os02g47300
OsAffx.2988.1.S1_at--843--8511Chr02:28881397..28881421 (25 bp)
TGGAAACTCGCCAATTCGTCAATCG
LOC_Os02g47300
OsAffx.2988.1.S1_at--56--3191Chr02:28881408..28881432 (25 bp)
CAATTCGTCAATCGCCATGGGTGCC
LOC_Os02g47300
OsAffx.2988.1.S1_at--206--3511Chr02:28881423..28881447 (25 bp)
CATGGGTGCCGCTGGTAGAATAGAA
LOC_Os02g47300
OsAffx.2988.1.S1_at--473--5971Chr02:28881453..28881477 (25 bp)
GAGAACTAGGTCATGCACATCCATC
LOC_Os02g47300
OsAffx.2988.1.S1_at--674--7771Chr02:28881484..28881873 (25 bp)
GGTGCACTGGGATCCACATGTTTTG
LOC_Os02g47300
OsAffx.2988.1.S1_at--1136--7691Chr02:28881874..28881898 (25 bp)
GGGTCTGCCACGATGACCTGGCGAC
LOC_Os02g47300
OsAffx.2988.1.S1_at--530--8471Chr02:28881892..28881916 (25 bp)
TGGCGACGGGCTACCTGCTCAATGA
LOC_Os02g47300
OsAffx.2988.1.S1_at--1049--1751Chr02:28881904..28881928 (25 bp)
ACCTGCTCAATGAGTTCACCGACGA
LOC_Os02g47300
Target Sequence 
TGGGTGCAGCGCAAAGTGGCCACTTGACCAGTTCTCATGTGCCTGGAAACTCGCCAATTCGTCAATCGCCATGGGTGCCG
CTGGTAGAATAGAAAGAGAGAGAACTAGGTCATGCACATCCATCAGGTGGGGTGCACTGGGATCCACATGTTTTGGGGTC
TGCCACGATGACCTGGCGACGGGCTACCTGCTCAATGAGTTCACCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis