Browse Element(s) Details


OsAffx.29881.1.S1_at

Description tigr:9637.m01438
TID=OsAffx.29881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1699011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16950Os.26900.1.A1_at11/119+10364053..10367261lectin protein kinase, putative, expressed
LOC_Os09g16960OsAffx.29880.1.S1_at10/119+10367725..10370428hypothetical protein
LOC_Os09g16960OsAffx.15850.1.S1_at1/119+10367725..10370428hypothetical protein
LOC_Os09g16970OsAffx.6308.1.S1_s_at11/119+10372584..10374583hypothetical protein
LOC_Os09g16980OsAffx.6309.1.S1_at10/119+10377531..10380849Calcium binding EGF domain containing protein
LOC_Os09g16990OsAffx.29881.1.S1_at11/119+10384915..10385752expressed protein
LOC_Os09g17000Os.39637.1.A1_s_at11/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.29883.1.S1_at10/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000Os.39637.1.A1_at8/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.25903.3.S1_at1/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17010OsAffx.6310.1.S1_at11/119+10406388..10409702lectin receptor kinase 1, putative
LOC_Os09g17010OsAffx.17536.1.S1_at1/119+10406388..10409702lectin receptor kinase 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29881.1.S1_at--993--6051Chr09:10385690..10385714 (25 bp)
GAGTTGCGGCGGTGACACGCGGCGA
LOC_Os09g16990
OsAffx.29881.1.S1_at--376--1131Chr09:10385603..10385627 (25 bp)
AGTGCGCAGAGAGGGCTTCGACGTC
LOC_Os09g16990
OsAffx.29881.1.S1_at--742--4071Chr09:10385436..10385582 (25 bp)
CGACGACGCGCAGCTTGAGTTTGAT
LOC_Os09g16990
OsAffx.29881.1.S1_at--205--1871Chr09:10385434..10385555 (25 bp)
ACGACGCGCAGCTTGAGTTTGATCA
LOC_Os09g16990
OsAffx.29881.1.S1_at--134--5811Chr09:10385432..10385553 (25 bp)
GACGCGCAGCTTGAGTTTGATCAAT
LOC_Os09g16990
OsAffx.29881.1.S1_at--193--4591Chr09:10385429..10385450 (22 bp)
GCGCAGCTTGAGTTTGATCAATGCT
LOC_Os09g16990
OsAffx.29881.1.S1_at--72--3034Chr03:6049023..6049449 (25 bp)
AATGCTGTCAAAATTTTATCAAATC
NONE
OsAffx.29881.1.S1_at--348--5611Chr09:10385382..10385406 (25 bp)
GACAATTTGTCAAACCTATGTTAAA
LOC_Os09g16990
OsAffx.29881.1.S1_at--1122--8771Chr09:10385364..10385388 (25 bp)
TGTTAAATTTATCAACCCACGTCAA
LOC_Os09g16990
OsAffx.29881.1.S1_at--10--10351Chr09:10385357..10385381 (25 bp)
TTTATCAACCCACGTCAAAACAAAG
LOC_Os09g16990
OsAffx.29881.1.S1_at--555--9691Chr09:10385353..10385377 (25 bp)
TCAACCCACGTCAAAACAAAGCAAG
LOC_Os09g16990
Target Sequence 
GAGTTGCGGCGGTGACACGCGGCGAGACGGTGGAGGCAGCGTGAGCTGCGGAGGTGGCGGCGTGGCACTCGTGGGGGCTT
CGGTGGCAGTGCGCAGAGAGGGCTTCGACGTCGGCGGCTGGCGTTGCGGTGGCGACGACGCGCAGCTTGAGTTTGATCAA
TGCTGTCAAAATTTTATCAAATCGAAGACAATTTGTCAAACCTATGTTAAATTTATCAACCCACGTCAAAACAAAGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis