Browse Element(s) Details


OsAffx.29889.1.S1_at

Description tigr:9637.m01470
TID=OsAffx.29889.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1727010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17200Os.38395.3.S1_x_at9/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.2.S1_x_at7/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.4.S1_x_at7/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.5.S1_at2/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.1.S1_at1/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17210OsAffx.29887.1.S1_at11/119+10565285..10566313hypothetical protein
LOC_Os09g17220OsAffx.6313.1.S1_at11/119+10569471..10569870hypothetical protein
LOC_Os09g17230OsAffx.29888.1.S1_at11/119+10571524..10571998hypothetical protein
LOC_Os09g17240Os.45721.1.S1_x_at3/119+10574908..10576723retrotransposon protein, putative, unclassified
LOC_Os09g17250Os.53142.1.S1_at3/119+10577655..10580546retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17260NANA9+10582307..10582840hypothetical protein
LOC_Os09g17270OsAffx.29889.1.S1_at10/119+10583691..10587885hypothetical protein
LOC_Os09g17270Os.426.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17270OsAffx.16944.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17270OsAffx.25360.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17280NANA9+10589466..10592798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17290Os.47463.1.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17290Os.14491.2.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17300OsAffx.29890.1.S1_at11/119+10600276..10600518hypothetical protein
LOC_Os09g17329Os.27811.1.S1_at11/119+10604005..10620832expressed protein
LOC_Os09g17329Os.53075.1.S1_at2/119+10604005..10620832expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29889.1.S1_at--1038--8471Chr09:10587770..10587794 (25 bp)
TGGCGGCGGCTGCATTCCTCCTCAT
LOC_Os09g17270
OsAffx.29889.1.S1_at--626--9611NONE
TCATCTCGCGTTTGCCGTCGGTGCT
NONE
OsAffx.29889.1.S1_at--586--9471Chr09:10585248..10585272 (25 bp)
TCTGTACTCTCACTTTCTTTCGCTT
LOC_Os09g17270
OsAffx.29889.1.S1_at--148--10571Chr09:10585234..10585258 (25 bp)
TTCTTTCGCTTCTCAATTCCTCCTT
LOC_Os09g17270
OsAffx.29889.1.S1_at--213--1871Chr09:10584106..10584130 (25 bp)
ACGAGGATGTCGGTACGTCGAAGAA
LOC_Os09g17270
OsAffx.29889.1.S1_at--152--1471Chr09:10584085..10584109 (25 bp)
AGAAGTGCAAACGAGCGGTTGCAAA
LOC_Os09g17270
OsAffx.29889.1.S1_at--329--6251Chr09:10583963..10583987 (25 bp)
GATGGATCGCATGGTTATACTCCTA
LOC_Os09g17270
OsAffx.29889.1.S1_at--1031--811Chr09:10583953..10583977 (25 bp)
ATGGTTATACTCCTAGCCCAGCTAG
LOC_Os09g17270
OsAffx.29889.1.S1_at--650--3711Chr09:10583941..10583965 (25 bp)
CTAGCCCAGCTAGGGTGAAATCTGG
LOC_Os09g17270
OsAffx.29889.1.S1_at--254--1391Chr09:10583883..10583907 (25 bp)
AGACATTGCTGGAGCGAATGCCCTT
LOC_Os09g17270
OsAffx.29889.1.S1_at--445--8091Chr09:10583873..10583897 (25 bp)
GGAGCGAATGCCCTTCTGGCGATTT
LOC_Os09g17270
Target Sequence 
TGGCGGCGGCTGCATTCCTCCTCATCTCGCGTTTGCCGTCGGTGCTCTTCGCCACCTCTGTACTCTCACTTTCTTTCGCT
TCTCAATTCCTCCTTCGCCACGGACCTGATGGCTCCTCGGCCGGCGACGAGGATGTCGGTACGTCGAAGAAGTGCAAACG
AGCGGTTGCAAAGGGTGGCCAGGTGCGAACTCGTCGCGCCGCTAAGGACGCGGCCGAAAGCGATGGTGGGGAGGAGGAAG
AAGACGATAGGGAGGCCGGATCTGAGGATGATGGATCGCATGGTTATACTCCTAGCCCAGCTAGGGTGAAATCTGGGGTG
GGCTCTCATGTTTCGCCCGTGCGCCCGCAAGACATTGCTGGAGCGAATGCCCTTCTGGCGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis