Browse Element(s) Details


OsAffx.29895.1.S1_at

Description tigr:9637.m01498
TID=OsAffx.29895.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1755011/11hypothetical protein
LOC_Os02g046901/11Cycloartenol synthase, putative, expressed
LOC_Os09g390341/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17520OsAffx.17757.1.S1_at11/119+10717518..10724105hypothetical protein
LOC_Os09g17520OsAffx.22564.2.S1_at1/119+10717518..10724105hypothetical protein
LOC_Os09g17520OsAffx.17424.1.S1_at1/119+10717518..10724105hypothetical protein
LOC_Os09g17530Os.57392.1.S1_at2/119+10731282..10732352F-box domain containing protein
LOC_Os09g17540Os.54347.1.S1_at11/119+10732801..10734332F-box domain containing protein, expressed
LOC_Os09g17550OsAffx.29895.1.S1_at11/119+10737215..10737792hypothetical protein
LOC_Os09g17560Os.53458.1.S1_at11/119+10739342..10740907O-methyltransferase family protein, expressed
LOC_Os09g17570OsAffx.30648.1.S1_at2/119+10745002..10746187hypothetical protein
LOC_Os09g17580OsAffx.6316.1.S1_x_at11/119+10750560..10751144expressed protein
LOC_Os09g17590NANA9+10754334..10755700hypothetical protein
LOC_Os09g17600Os.27354.1.S1_at11/119+10762251..10767262expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29895.1.S1_at--911--2591Chr09:10737442..10737756 (25 bp)
AACCTGGGCCGAGTGTCGTGCCGGG
LOC_Os09g17550
OsAffx.29895.1.S1_at--1078--2713Chr09:10737398..10737422 (25 bp)
AAGCAGCCTAGGCATGGCCCGGCTA
LOC_Os09g17550
OsAffx.29895.1.S1_at--595--9431Chr09:10737373..10737397 (25 bp)
TCGGGACGGGCCAGCAAGGACCCAA
LOC_Os09g17550
OsAffx.29895.1.S1_at--444--1471Chr09:10737361..10737385 (25 bp)
AGCAAGGACCCAACCCTAGTCAAGC
LOC_Os09g17550
OsAffx.29895.1.S1_at--726--2591Chr09:10737350..10737374 (25 bp)
AACCCTAGTCAAGCCGTGTCGTGCT
LOC_Os09g17550
OsAffx.29895.1.S1_at--361--1172Chr09:10737344..10737368 (25 bp)
AGTCAAGCCGTGTCGTGCTTGGGCT
LOC_Os09g17550
OsAffx.29895.1.S1_at--152--8651Chr09:10737325..10737349 (25 bp)
TGGGCTGGGCCAAATTCCCATGCCT
LOC_Os09g17550
OsAffx.29895.1.S1_at--707--7591Chr09:10737318..10737342 (25 bp)
GGCCAAATTCCCATGCCTTGGGCCA
LOC_Os09g17550
OsAffx.29895.1.S1_at--448--10071Chr09:10737273..10737297 (25 bp)
TATGGCCAACTATACCCTGGCTTTG
LOC_Os09g17550
OsAffx.29895.1.S1_at--289--311Chr09:10737262..10737286 (25 bp)
ATACCCTGGCTTTGTGGGCTTCGAA
LOC_Os09g17550
OsAffx.29895.1.S1_at--510--7471Chr09:10737249..10737273 (25 bp)
GTGGGCTTCGAACTGGCCCATCCAG
LOC_Os09g17550
Target Sequence 
AACCTGGGCCGAGTGTCGTGCCGGGCTGGCCCACCGTGCCGAGGAAGCAGCCTAGGCATGGCCCGGCTATCGGGACGGGC
CAGCAAGGACCCAACCCTAGTCAAGCCGTGTCGTGCTTGGGCTGGGCCAAATTCCCATGCCTTGGGCCAGGCTATCGGGC
CTCGGGCCATATGGCCAACTATACCCTGGCTTTGTGGGCTTCGAACTGGCCCATCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis