Browse Element(s) Details


OsAffx.29976.1.S1_at

Description tigr:9637.m01956
TID=OsAffx.29976.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2246011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22420OsAffx.17849.1.S1_at11/119+13536731..13537689hypothetical protein
LOC_Os09g22420OsAffx.6361.1.S1_at2/119+13536731..13537689hypothetical protein
LOC_Os09g22430OsAffx.6366.1.S1_at11/119+13538170..13539189hypothetical protein
LOC_Os09g22440Os.9979.1.S1_at11/119+13552672..13557088expressed protein
LOC_Os09g22450Os.6774.1.S1_at11/119+13558547..13562069Lipase family protein, expressed
LOC_Os09g22460OsAffx.29976.1.S1_at11/119+13562564..13563715F-box domain containing protein
LOC_Os09g22470OsAffx.17850.1.S1_at11/119+13564643..13565788hypothetical protein
LOC_Os09g22480NANA9+13566936..13567319hypothetical protein
LOC_Os09g22490NANA9+13568371..13568598hypothetical protein
LOC_Os09g22500Os.27389.2.S1_a_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_s_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_at5/119+13570645..13575072hypothetical protein
LOC_Os09g22500Os.52345.1.S1_at1/119+13570645..13575072hypothetical protein
LOC_Os09g22510Os.8846.1.S1_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.12988.1.S1_x_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.4565.1.S1_at1/119+13577168..13580613hypothetical protein
LOC_Os09g22520OsAffx.17849.1.S1_at1/119+13582619..13583644hypothetical protein
LOC_Os09g22530OsAffx.6368.1.S1_at10/119+13584768..13585925expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29976.1.S1_at--468--9271Chr09:13562701..13562725 (25 bp)
TCATCGTCCAACACAAAGTATTCCA
LOC_Os09g22460
OsAffx.29976.1.S1_at--609--7271Chr09:13562696..13562720 (25 bp)
GTCCAACACAAAGTATTCCACTATG
LOC_Os09g22460
OsAffx.29976.1.S1_at--635--6871Chr09:13562684..13562708 (25 bp)
GTATTCCACTATGGGGGATCACAGC
LOC_Os09g22460
OsAffx.29976.1.S1_at--206--7671Chr09:13562670..13562694 (25 bp)
GGGATCACAGCAATGGCACATGCTG
LOC_Os09g22460
OsAffx.29976.1.S1_at--876--9691Chr09:13562666..13562690 (25 bp)
TCACAGCAATGGCACATGCTGCGAA
LOC_Os09g22460
OsAffx.29976.1.S1_at--614--3191Chr09:13562660..13562684 (25 bp)
CAATGGCACATGCTGCGAAAAATGT
LOC_Os09g22460
OsAffx.29976.1.S1_at--97--2451Chr09:13562642..13562666 (25 bp)
AAAATGTGCAGATGTGTGGTCGTAC
LOC_Os09g22460
OsAffx.29976.1.S1_at--749--771Chr09:13562639..13562663 (25 bp)
ATGTGCAGATGTGTGGTCGTACAAA
LOC_Os09g22460
OsAffx.29976.1.S1_at--709--7331Chr09:13562637..13562661 (25 bp)
GTGCAGATGTGTGGTCGTACAAATT
LOC_Os09g22460
OsAffx.29976.1.S1_at--123--792Chr09:13562631..13562655 (25 bp)
ATGTGTGGTCGTACAAATTGGGACA
LOC_Os09g22460
OsAffx.29976.1.S1_at--1100--7473Chr09:10463262..10463281 (20 bp)
GTGTGGTCGTACAAATTGGGACAGC
NONE
Target Sequence 
TCATCGTCCAACACAAAGTATTCCACTATGGGGGATCACAGCAATGGCACATGCTGCGAAAAATGTGCAGATGTGTGGTC
GTACAAATTGGGACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis