Browse Element(s) Details


OsAffx.30036.1.S1_at

Description tigr:9637.m02293
TID=OsAffx.30036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2632011/11hypro1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26290NANA9+15887896..15889073hypothetical protein
LOC_Os09g26300Os.6003.1.S1_x_at3/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300Os.5646.1.S1_at2/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300OsAffx.3068.1.S1_x_at1/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26310Os.6003.1.S1_x_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26310Os.51638.1.S1_s_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26320OsAffx.30036.1.S1_at11/119+15909194..15910056hypro1, putative
LOC_Os09g26330OsAffx.30037.1.S1_at11/119+15913089..15914027hypro1, putative
LOC_Os09g26340Os.12348.2.S1_at11/119+15915010..15915482Histone H4, putative, expressed
LOC_Os09g26350OsAffx.30038.1.S1_at11/119+15915627..15916580hypothetical protein
LOC_Os09g26360Os.53386.1.S1_at11/119+15920630..15923037Pectinesterase family protein, expressed
LOC_Os09g26370Os.53428.1.S1_at11/119+15926026..15927142expressed protein
LOC_Os09g26380Os.54981.1.S1_at11/119+15929509..15935551Alanine aminotransferase 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30036.1.S1_at--933--8111Chr09:15909799..15909823 (25 bp)
GGACGTGCGGTTCGTGCTGTGCGAC
LOC_Os09g26320
OsAffx.30036.1.S1_at--210--4691Chr09:15909793..15909817 (25 bp)
GCGGTTCGTGCTGTGCGACGTGACG
LOC_Os09g26320
OsAffx.30036.1.S1_at--192--9371Chr09:15909707..15909731 (25 bp)
TCGACGGCTGCAGTACCGAGAACAT
LOC_Os09g26320
OsAffx.30036.1.S1_at--1145--1931Chr09:15909704..15909728 (25 bp)
ACGGCTGCAGTACCGAGAACATGAA
LOC_Os09g26320
OsAffx.30036.1.S1_at--1143--8211Chr09:15909552..15909576 (25 bp)
GGCAAGCCGCGGAGGACGTCTACCT
LOC_Os09g26320
OsAffx.30036.1.S1_at--568--9331Chr09:15909453..15909477 (25 bp)
TCGCGCGCTGGGTGTCCGCCAACGA
LOC_Os09g26320
OsAffx.30036.1.S1_at--824--5651Chr09:15909304..15909328 (25 bp)
GACATGGACGAGTTCCGGCCCAACA
LOC_Os09g26320
OsAffx.30036.1.S1_at--436--2111Chr09:15909303..15909327 (25 bp)
ACATGGACGAGTTCCGGCCCAACAC
LOC_Os09g26320
OsAffx.30036.1.S1_at--809--1731Chr09:15909280..15909304 (25 bp)
ACCATCGCCGTGCACAGGCTCAAGA
LOC_Os09g26320
OsAffx.30036.1.S1_at--172--531Chr09:15909277..15909301 (25 bp)
ATCGCCGTGCACAGGCTCAAGAACA
LOC_Os09g26320
OsAffx.30036.1.S1_at--384--7411Chr09:15909235..15909259 (25 bp)
GTGTTCCGGCACTTCAACGTCACCG
LOC_Os09g26320
Target Sequence 
GGACGTGCGGTTCGTGCTGTGCGACGTGACGGACGCCGCGGACGCGGTGCTGGTGGCGGCGGAGGCGGCGCGGCACGGCG
ACATCCTGGTGCTCGACGGCTGCAGTACCGAGAACATGAACGACGGCAAGACGCACGCGTACCTCTCCTCCGTGCCGCGC
CTGTTCGCGCCGTGCCCCTACGACTACGTCATGAAGGCCGACGACGACACGTACCTCCGCGTGGCGGCGCTCGCCGACGA
GCTCCGCGGCAAGCCGCGGAGGACGTCTACCTCGGCCGGGGCTACGCCGTCGGCGACGACCCGATGCCGTTCATGCACGG
CATGGGCTACGTCGTGTCCTGGGACGTCGCGCGCTGGGTGTCCGCCAACGAGGACATCGGGACGGAACCGGTACAACCTC
AAGCCGCGGATGTACGACATCAACTGGGACATGGACGAGTTCCGGCCCAACACCATCGCCGTGCACAGGCTCAAGAACAA
CCGCCGGTGGGCCGCCGTGTTCCGGCACTTCAACGTCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis