Browse Element(s) Details


OsAffx.30039.1.S1_at

Description tigr:9637.m02312
TID=OsAffx.30039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AT3g48690T8P19_200, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2650011/11serine hydrolase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26460Os.50359.1.S1_at11/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_x_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45817.1.S1_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_at9/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460OsAffx.18435.1.S1_x_at1/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26470OsAffx.17910.1.S1_at11/119+15990280..15995928IBR domain containing protein, expressed
LOC_Os09g26480OsAffx.17911.1.S1_at11/119+16001196..16002357hypothetical protein
LOC_Os09g26490OsAffx.6406.1.S1_at11/119+16008645..16009892esterase, putative
LOC_Os09g26500OsAffx.30039.1.S1_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26500OsAffx.30039.2.S1_s_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26510OsAffx.30040.1.S1_at7/119+16016089..16016752hypothetical protein
LOC_Os09g26520OsAffx.17912.1.S1_at11/119+16022741..16027615hypothetical protein
LOC_Os09g26530OsAffx.30041.1.S1_at11/119+16029133..16031188expressed protein
LOC_Os09g26540Os.54295.1.S1_at10/119+16038121..16044462expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30039.1.S1_at--240--9231Chr09:16014063..16014087 (25 bp)
TCCAGGTGCGTGGAACACTGCTTCC
LOC_Os09g26500
OsAffx.30039.1.S1_at--252--6171Chr09:16014198..16014222 (25 bp)
GAGGAGCGCGCCACTAAGAAAACGA
LOC_Os09g26500
OsAffx.30039.1.S1_at--588--4551Chr09:16014203..16014227 (25 bp)
GCGCGCCACTAAGAAAACGAGGTCA
LOC_Os09g26500
OsAffx.30039.1.S1_at--887--7771Chr09:16014236..16014260 (25 bp)
GGTGCCAGCTTGTTGGAGAGTTCCC
LOC_Os09g26500
OsAffx.30039.1.S1_at--761--1091Chr09:16014241..16014265 (25 bp)
CAGCTTGTTGGAGAGTTCCCCGCGG
LOC_Os09g26500
OsAffx.30039.1.S1_at--2--4391Chr09:16014281..16014305 (25 bp)
CCAAGCTGTGGTTGGGCTTCGACGT
LOC_Os09g26500
OsAffx.30039.1.S1_at--1094--7711Chr09:16014316..16014340 (25 bp)
GGGTGGGCAACATGATCAGGCTTCC
LOC_Os09g26500
OsAffx.30039.1.S1_at--1162--2091Chr09:16014325..16014349 (25 bp)
ACATGATCAGGCTTCCCAGTAAGGC
LOC_Os09g26500
OsAffx.30039.1.S1_at--544--891Chr09:16014333..16014357 (25 bp)
AGGCTTCCCAGTAAGGCCCAGAAGT
LOC_Os09g26500
OsAffx.30039.1.S1_at--1010--4151Chr09:16014339..16014363 (25 bp)
CCCAGTAAGGCCCAGAAGTATCATC
LOC_Os09g26500
OsAffx.30039.1.S1_at--981--2831Chr09:16014354..16014378 (25 bp)
AAGTATCATCGTGTTCCTGCAATTG
LOC_Os09g26500
Target Sequence 
TCCAGGTGCGTGGAACACTGCTTCCACCTCTTGCCGGAGTTCGGCTCCCACGCGGAGACCGGCGTGCTCATGGATCGCGT
CGCCATGTTCATCGCCAAGGGCAAGACACCACCACCGATCAGCATGCTGATGGAGGAGGAGCGCGCCACTAAGAAAACGA
GGTCAAGTGCGGTGGTGCCAGCTTGTTGGAGAGTTCCCCGCGGGCCGAGGTGTACGGCCCAAGCTGTGGTTGGGCTTCGA
CGTGCCGGGTTTGGGGTGGGCAACATGATCAGGCTTCCCAGTAAGGCCCAGAAGTATCATCGTGTTCCTGCAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis