Browse Element(s) Details


OsAffx.30120.2.S1_s_at

Description tigr:9637.m02852
TID=OsAffx.30120.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein L32, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3252610/11FK506-binding protein 2-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32480NANA9+19388981..19390264hypothetical protein
LOC_Os09g32490OsAffx.20169.1.S1_at8/119+19391557..19393658retrotransposon protein, putative, LINE subclass
LOC_Os09g32500Os.13485.1.S1_at10/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32500Os.8861.1.S1_x_at4/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32510Os.20775.1.S1_at11/119+19405796..19407978Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g32520OsAffx.30120.3.S1_s_at11/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32520Os.8861.1.S1_x_at7/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32526Os.11022.1.S1_at11/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526OsAffx.30120.2.S1_s_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526Os.11022.1.S1_x_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g32560OsAffx.30121.1.S1_at11/119+19439400..19440631hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30120.2.S1_s_at--435--3711Chr09:19415836..19415860 (25 bp)
CTAGCTATGAAAGAGGTGACCCAAT
LOC_Os09g32526
OsAffx.30120.2.S1_s_at--916--6131Chr09:19415824..19415848 (25 bp)
GAGGTGACCCAATCGAATTTGAGTT
LOC_Os09g32526
OsAffx.30120.2.S1_s_at--819--511Chr09:19415813..19415837 (25 bp)
ATCGAATTTGAGTTGGGCACTGGCC
LOC_Os09g32526
OsAffx.30120.2.S1_s_at--502--4111Chr09:19415811..19415835 (25 bp)
CGAATTTGAGTTGGGCACTGGCCAA
LOC_Os09g32526
OsAffx.30120.2.S1_s_at--859--6051Chr09:19415804..19415828 (25 bp)
GAGTTGGGCACTGGCCAAGTGATCA
LOC_Os09g32526
OsAffx.30120.2.S1_s_at--46--10851Chr09:19415801..19415825 (25 bp)
TTGGGCACTGGCCAAGTGATCAAAG
LOC_Os09g32526
OsAffx.30120.2.S1_s_at--478--4491Chr09:19415347..19415601 (25 bp)
GCCGACCATCCCTGGTGGAGCGACT
LOC_Os09g32526
OsAffx.30120.2.S1_s_at--71--551Chr09:19415340..19415594 (25 bp)
ATCCCTGGTGGAGCGACTCTCATTT
LOC_Os09g32526
OsAffx.30120.2.S1_s_at--973--3891NONE
CTGGTGGAGCGACTCTCATTTTCGA
NONE
OsAffx.30120.2.S1_s_at--1047--7691Chr09:19415334..19415358 (25 bp)
GGTGGAGCGACTCTCATTTTCGATA
LOC_Os09g32526
OsAffx.30120.2.S1_s_at--1049--8531Chr09:19415332..19415356 (25 bp)
TGGAGCGACTCTCATTTTCGATACC
LOC_Os09g32526
Target Sequence 
CTAGCTATGAAAGAGGTGACCCAATCGAATTTGAGTTGGGCACTGGCCAAGTGATCAAAGGGTGGGATCAGGGCATTCTG
GGCATGTGCGTTGGCGAGAAGAGGAAGCTGAAGATCCCTTCAAAGCTCGGTTATGGTGCTCAAGGGTCACCGCCGACCAT
CCCTGGTGGAGCGACTCTCATTTTCGATACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30120.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis