Browse Element(s) Details


OsAffx.30140.1.S1_at

Description tigr:9637.m02962
TID=OsAffx.30140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3429011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34240OsAffx.17993.1.S1_at10/119+20218376..20219892hypothetical protein
LOC_Os09g34250Os.48216.1.S1_at11/119+20221695..20223511UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34260OsAffx.10665.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55138.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260OsAffx.20707.2.S1_x_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55476.1.S1_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_x_at11/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_at9/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.20187.1.S1_at3/119+20228189..20233470hypothetical protein
LOC_Os09g34280Os.9097.1.A1_at11/119+20235938..20240135ankyrin repeat family protein, putative, expressed
LOC_Os09g34290OsAffx.30140.1.S1_at11/119+20241008..20242592hypothetical protein
LOC_Os09g34300Os.10518.1.S1_at11/119+20243173..20248047Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os09g34310NANA9+20251801..20254012expressed protein
LOC_Os09g34320Os.5209.2.S1_at10/119+20257935..20259483expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30140.1.S1_at--265--2331Chr09:20241557..20241581 (25 bp)
AAAGTCTGCTACTCCGACGGCAAGA
LOC_Os09g34290
OsAffx.30140.1.S1_at--356--5751Chr09:20241542..20241566 (25 bp)
GACGGCAAGATCCAGTAGCTCTTCA
LOC_Os09g34290
OsAffx.30140.1.S1_at--823--3291Chr09:20241500..20241524 (25 bp)
CAAAGGAGATCCTGCTCTCTCTGAA
LOC_Os09g34290
OsAffx.30140.1.S1_at--50--3771Chr09:20241486..20241510 (25 bp)
CTCTCTCTGAAGTGACCACAGCTTA
LOC_Os09g34290
OsAffx.30140.1.S1_at--912--6451Chr09:20241447..20241471 (25 bp)
GATCAAGCTACACTCCTCTGAAGAA
LOC_Os09g34290
OsAffx.30140.1.S1_at--527--331Chr09:20241421..20241445 (25 bp)
ATACAACAACTTGCAGCTCCAACAA
LOC_Os09g34290
OsAffx.30140.1.S1_at--326--5211Chr09:20241340..20241364 (25 bp)
GAATTCCCAGGCAGCACAAATGCAG
LOC_Os09g34290
OsAffx.30140.1.S1_at--624--871Chr09:20241307..20241331 (25 bp)
ATGGCCAAACTAGGAATCCCCGACA
LOC_Os09g34290
OsAffx.30140.1.S1_at--96--5571Chr09:20241251..20241275 (25 bp)
GAAAGCTCGGTCCAAAGATCCCGCA
LOC_Os09g34290
OsAffx.30140.1.S1_at--1114--1431Chr09:20241109..20241133 (25 bp)
AGAACTGGAGGTGAGCCTGCTCCTG
LOC_Os09g34290
OsAffx.30140.1.S1_at--640--4491Chr09:20241075..20241099 (25 bp)
GCCGTGCCACTGAAGCTACTACAAA
LOC_Os09g34290
Target Sequence 
AAAGTCTGCTACTCCGACGGCAAGATCCAGTAGCTCTTCATCAAAGAAAAACTTCACCAAAGGAGATCCTGCTCTCTCTG
AAGTGACCACAGCTTACAAAATGGACAAGAGATCAAGCTACACTCCTCTGAAGAACATACAACAACTTGCAGCTCCAACA
ACTAAAAGTACAGCAGCCAGCAAAGCAGCCAAGAAAACCTCAGCCAGCAAGAAGCCTGAATTCCCAGGCAGCACAAATGC
AGTAAACAAAATGGCCAAACTAGGAATCCCCGACAAGCCGCTGAAGAAAACCACAGCGACTGCACCGAAAGCTCGGTCCA
AAGATCCCGCAATTGGTATGAAGGATCTGAAAATGGATGCTGGCACAGCAAGAAGAATGCCATGCCCACCTGCTGCAACA
GTGGGTAGCAACAATGAGCTTAACAAAGTTGCAGGGAAAGGAAGGAGAAGAACTGGAGGTGAGCCTGCTCCTGGCAATGG
CAGCCGTGCCACTGAAGCTACTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis