Browse Element(s) Details


OsAffx.30153.1.S1_at

Description tigr:9634.m04448
TID=OsAffx.30153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4577011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45710Os.11118.1.S1_at11/116+27675392..27678753Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os06g45720OsAffx.28121.1.S1_at11/116+27680410..27681489BTB/POZ domain containing protein
LOC_Os06g45730Os.55412.1.S1_at11/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45730OsAffx.30579.1.S1_x_at1/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45740NANA6+27686302..27689021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45750NANA6+27689484..27692242retrotransposon protein, putative, unclassified
LOC_Os06g45760OsAffx.11259.1.S1_at1/116+27693865..27697529retrotransposon protein, putative, unclassified
LOC_Os06g45770OsAffx.30153.1.S1_at11/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45770OsAffx.30153.2.S1_x_at1/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45780OsAffx.5118.1.S1_x_at11/116+27703859..27704929hypothetical protein
LOC_Os06g45780Os.5212.2.S1_at6/116+27703859..27704929hypothetical protein
LOC_Os06g45780OsAffx.5136.1.S1_at3/116+27703859..27704929hypothetical protein
LOC_Os06g45790OsAffx.28123.1.S1_at11/116+27706148..27706591hypothetical protein
LOC_Os06g45800OsAffx.15942.1.S1_at11/116+27708822..27718177PAP/25A associated domain containing protein, expressed
LOC_Os06g45810Os.20602.2.S1_x_at11/116+27718971..27721151hAT family dimerisation domain containing protein
LOC_Os06g45820Os.9440.1.S1_a_at11/116+27723579..27727261Cell division protein ftsH homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30153.1.S1_at--974--5351Chr06:27699488..27699512 (25 bp)
GAAGAGCGACAGTCGCACGCGTTCG
LOC_Os06g45770
OsAffx.30153.1.S1_at--1067--3791Chr06:27699447..27699471 (25 bp)
CTCGCCGTGGGTTCTGCTCGTGAAG
LOC_Os06g45770
OsAffx.30153.1.S1_at--448--4651Chr06:27699407..27699431 (25 bp)
GCGTCGGGTTTCATCACCGGCGACT
LOC_Os06g45770
OsAffx.30153.1.S1_at--10--7791Chr06:27699357..27699381 (25 bp)
GGTGCTCAGCAAGAACACCATCAAC
LOC_Os06g45770
OsAffx.30153.1.S1_at--462--6071Chr06:27699260..27699284 (25 bp)
GAGTTCATCGTTTCCGGCGTGTCCA
LOC_Os06g45770
OsAffx.30153.1.S1_at--425--4531Chr06:27699188..27699212 (25 bp)
GCCGCCGTCCTGAAAGGTGGCACGA
LOC_Os06g45770
OsAffx.30153.1.S1_at--932--9151Chr06:27699145..27699169 (25 bp)
TGCGCGTTGAGGTCAAGGACGACAT
LOC_Os06g45770
OsAffx.30153.1.S1_at--319--5791Chr06:27699128..27699152 (25 bp)
GACGACATGAGAGCCGGCGTCTTCA
LOC_Os06g45770
OsAffx.30153.1.S1_at--619--1351Chr06:27699053..27699077 (25 bp)
AGAGAGGATGGTTCTGATCCCCTGC
LOC_Os06g45770
OsAffx.30153.1.S1_at--132--691Chr06:27699011..27699035 (25 bp)
ATGAGCTTGAATGAAGCCGCGGGTC
LOC_Os06g45770
OsAffx.30153.1.S1_at--497--6211Chr06:27698973..27698997 (25 bp)
GAGGCTCAAGCAGATTTGCGAGAAT
LOC_Os06g45770
Target Sequence 
GAAGAGCGACAGTCGCACGCGTTCGGGTCCGCGAACGAGAGCTCGCCGTGGGTTCTGCTCGTGAAGCGGAGGGAGCTGGA
GGCGTCGGGTTTCATCACCGGCGACTCCTTCGCCGTGCGCTGCACCATCACGGTGCTCAGCAAGAACACCATCAACTCGG
CCGAGCCGTCCCCCGACCTTCACCTGCAGCTCGGTGAGCTGCTGCGGAGCGGGAGATTCGCCGACGTCGAGTTCATCGTT
TCCGGCGTGTCCATCGCGGCGCACAGGTGCGTGCTCGCCGCGAGGTCGCCGTCCCTCGCCGCCGCCGTCCTGAAAGGTGG
CACGAGGAAGAAGGATGGGTCGGTGCGCGTTGAGGTCAAGGACGACATGAGAGCCGGCGTCTTCAGGGCGCTGCTCCATT
TCATCTACACCGACACGTTGATGGAGCTCGACTGGAGAGAGGATGGTTCTGATCCCCTGCTGCCGAGGACGATGGTGATG
AGCTTGAATGAAGCCGCGGGTCGGTATGGGCTGGAGAGGCTCAAGCAGATTTGCGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis