Browse Element(s) Details


OsAffx.30183.1.S1_at

Description tigr:9637.m03231
TID=OsAffx.30183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3793011/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37890OsAffx.30180.3.S1_at11/119+21846101..21849537D-mannose binding lectin family protein
LOC_Os09g37900OsAffx.30182.1.S1_at11/119+21850940..21852804hypothetical protein
LOC_Os09g37910Os.57443.1.S1_x_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.7893.1.S1_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.57484.1.S1_x_at2/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37920OsAffx.18040.1.S1_at11/119+21859936..21867685DNA repair helicase family protein, expressed
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g37940OsAffx.30187.3.S1_at8/119+21878722..21879228hypothetical protein
LOC_Os09g37949Os.49814.1.S1_at11/119+21880684..21884141Protein kinase domain containing protein, expressed
LOC_Os09g37958NANA9+21886822..21888489legumin, putative
LOC_Os09g37967Os.55779.1.S1_at11/119+21891330..21892804Cupin family protein, expressed
LOC_Os09g37976Os.55742.1.S1_at10/119+21895086..21896501Cupin family protein, expressed
LOC_Os09g37990OsAffx.18041.1.S1_at8/119+21898382..21899005hypothetical protein
LOC_Os09g38000OsAffx.30184.1.S1_at10/119+21902233..21904578no apical meristem family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0005524molecular_functionATP binding
GO:0030674molecular_functionprotein binding, bridging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30183.1.S1_at--549--7671Chr09:21870507..21870531 (25 bp)
GGGATTACTTACTTGGACTCTGAGG
LOC_Os09g37930
OsAffx.30183.1.S1_at--146--6191Chr09:21870328..21870507 (25 bp)
GAGGACTTAGTTCTCCCTGAGACTG
LOC_Os09g37930
OsAffx.30183.1.S1_at--609--4031Chr09:21869814..21869838 (25 bp)
CGTTCTGAGGAGACAATCGCGCCGT
LOC_Os09g37930
OsAffx.30183.1.S1_at--836--6811Chr09:21869207..21869231 (25 bp)
GTATTTTGGGCGTCACTTTAACAGG
LOC_Os09g37930
OsAffx.30183.1.S1_at--147--6431Chr09:21869179..21869202 (24 bp)
GATCTTATGGACTTCATTCAGCAGC
LOC_Os09g37930
OsAffx.30183.1.S1_at--1158--5611Chr09:21868919..21868943 (25 bp)
GACACAGATGGGTCGTCAGCTATCC
LOC_Os09g37930
OsAffx.30183.1.S1_at--478--3391Chr09:21868891..21868915 (25 bp)
CAGCGGTCATTCGTATTCTCAATTT
LOC_Os09g37930
OsAffx.30183.1.S1_at--926--411Chr09:21868759..21868783 (25 bp)
ATCATGTTTGGCGATCCTCTGCTAC
LOC_Os09g37930
OsAffx.30183.1.S1_at--799--491Chr09:21868733..21868757 (25 bp)
ATCGGAGTGCTCTCTGATTATCGAA
LOC_Os09g37930
OsAffx.30183.1.S1_at--976--3551Chr09:21868560..21868719 (25 bp)
CATCTTTATGTTTCCAGTGTGCTCA
LOC_Os09g37930
OsAffx.30183.1.S1_at--389--7291Chr09:21868519..21868543 (25 bp)
GTGCCGATTGTGAACGTCGCATCTC
LOC_Os09g37930
Target Sequence 
GGGATTACTTACTTGGACTCTGAGGAGGACTTAGTTCTCCCTGAGACTGGATTTCAATTGTTCCAAAAGTATATGCAACA
GATCCAAAGTTGGGGCTGGATCATCAACAGTACTAATTCCTGTGAATCATTCAAAAAGAACATGAACGTTCTGAGGAGAC
AATCGCGCCGTCTTACTCTTGCTGCTGTTCCATGTATTTTGGGCGTCACTTTAACAGGAAAAGATCTTATGGACTTCATT
CAGCAGCTTGATGACACAGATGGGTCGTCAGCTATCCCCCCAGCGGTCATTCGTATTCTCAATTTCAAGGCTTGCAGAGG
TGCGATCATGTTTGGCGATCCTCTGCTACCATCGGAGTGCTCTCTGATTATCGAAGAACTGAAAGCAACATCTTTATGTT
TCCAGTGTGCTCATGGACGTCCGACCACCGTGCCGATTGTGAACGTCGCATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis