Browse Element(s) Details


OsAffx.30227.1.S1_at

Description tigr:9638.m00049
TID=OsAffx.30227.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0146011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01430OsAffx.30225.1.S1_at11/1110+244165..244653hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_x_at10/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_at9/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.4.S1_x_at1/1110+249251..251270hypothetical protein
LOC_Os10g01450OsAffx.442.1.S1_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.442.1.S1_x_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_s_at10/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_x_at4/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.19052.1.S1_at1/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01460OsAffx.30227.1.S1_at11/1110+266298..266711hypothetical protein
LOC_Os10g01470Os.27388.1.S1_s_at11/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os10g01470Os.49759.1.S1_x_at1/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os10g01480Os.46870.1.S1_at11/1110+285960..292214inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30227.1.S1_at--36--8651Chr10:266624..266648 (25 bp)
TGGGCACCCACGACGTTGGTAGCAT
LOC_Os10g01460
OsAffx.30227.1.S1_at--517--3351Chr10:266616..266640 (25 bp)
CACGACGTTGGTAGCATGGCAGCAT
LOC_Os10g01460
OsAffx.30227.1.S1_at--1019--10011Chr10:266605..266629 (25 bp)
TAGCATGGCAGCATTCTTATCCCGA
LOC_Os10g01460
OsAffx.30227.1.S1_at--846--851Chr10:266601..266625 (25 bp)
ATGGCAGCATTCTTATCCCGAGCTC
LOC_Os10g01460
OsAffx.30227.1.S1_at--374--5971Chr10:266552..266576 (25 bp)
GAGAACCTCGCGAAGACCCTAGCAA
LOC_Os10g01460
OsAffx.30227.1.S1_at--848--9331Chr10:266545..266569 (25 bp)
TCGCGAAGACCCTAGCAAGGTGGAG
LOC_Os10g01460
OsAffx.30227.1.S1_at--242--4631Chr10:266449..266473 (25 bp)
GCGAGGAGAACACCGCTGTGCTATC
LOC_Os10g01460
OsAffx.30227.1.S1_at--462--1431Chr10:266443..266467 (25 bp)
AGAACACCGCTGTGCTATCGAGCCT
LOC_Os10g01460
OsAffx.30227.1.S1_at--1052--3871Chr10:266434..266458 (25 bp)
CTGTGCTATCGAGCCTGTGGGAGCT
LOC_Os10g01460
OsAffx.30227.1.S1_at--142--8271Chr10:266394..266418 (25 bp)
GGCATGCGTCTACTACGGTGACGTT
LOC_Os10g01460
OsAffx.30227.1.S1_at--83--11Chr10:266388..266412 (25 bp)
CGTCTACTACGGTGACGTTGCGGGT
LOC_Os10g01460
Target Sequence 
TGGGCACCCACGACGTTGGTAGCATGGCAGCATTCTTATCCCGAGCTCCGCCTCCAGTCTCCTCTGCCAAAGGAGAACCT
CGCGAAGACCCTAGCAAGGTGGAGGGAGAAGCTACGGGCGCCCGGCCGAGGCTTGCCGCCGGCCGACTACAGCTACATCA
AGATCGGGGACGTCTGCGAGGAGAACACCGCTGTGCTATCGAGCCTGTGGGAGCTCGGCGCGTCGGAGCCGGCATGCGTC
TACTACGGTGACGTTGCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis