Browse Element(s) Details


OsAffx.30352.3.S1_at

Description tigr:9629.m00600
TID=OsAffx.30352.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0671011/11hypothetical protein
LOC_Os02g587806/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06670Os.32879.1.S1_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06670Os.32879.1.S2_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06680OsAffx.1685.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.22766.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.25437.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.15781.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680Os.8855.1.S1_at1/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06690OsAffx.24927.2.S1_x_at11/111+3153981..3155789hypothetical protein
LOC_Os01g06690OsAffx.24927.1.S1_x_at7/111+3153981..3155789hypothetical protein
LOC_Os01g06700OsAffx.30352.2.S1_at11/111+3158122..3164468retrotransposon protein, putative, unclassified
LOC_Os01g06710OsAffx.30352.3.S1_at11/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.18947.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.39421.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.30352.1.S1_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.27342.1.S2_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.20967.1.S1_x_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06720OsAffx.23138.1.S1_at10/111+3173346..3176404Leucine Rich Repeat family protein
LOC_Os01g06730Os.24977.1.A1_at7/111+3178941..3182009Leucine Rich Repeat family protein
LOC_Os01g06740Os.11371.1.S1_at11/111+3185839..3187132Ribosome inactivating protein, expressed
LOC_Os01g06740Os.1665.2.S1_x_at1/111+3185839..3187132Ribosome inactivating protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30352.3.S1_at--904--2851Chr01:3164986..3165010 (25 bp)
AAGTCCACCCACAATTCAGCTCGGA
LOC_Os01g06710
OsAffx.30352.3.S1_at--424--133Chr09:16602507..16602531 (25 bp)
ATTCAGCTCGGAGGGTTCAAGACGA
NONE
OsAffx.30352.3.S1_at--1109--2752Chr02:35911774..35911798 (25 bp)
AAGACGAAGCACATCTTCCTCTCAA
LOC_Os02g58780
OsAffx.30352.3.S1_at--674--432Chr02:35911762..35911786 (25 bp)
ATCTTCCTCTCAAGAAGCAACTAGA
LOC_Os02g58780
OsAffx.30352.3.S1_at--394--2731Chr01:3164929..3164953 (25 bp)
AAGCAACTAGAGCTTCAGCCCCTTG
LOC_Os01g06710
OsAffx.30352.3.S1_at--564--2531Chr01:3164925..3164949 (25 bp)
AACTAGAGCTTCAGCCCCTTGTCTT
LOC_Os01g06710
OsAffx.30352.3.S1_at--98--4193Chr09:16602444..16602468 (25 bp)
CCCTTGTCTTCCTATCGGTACAGGA
NONE
OsAffx.30352.3.S1_at--543--9433Chr09:16602431..16602454 (24 bp)
TCGGTACAGGAGAAGGATCGTTATC
NONE
OsAffx.30352.3.S1_at--361--7611Chr01:3164865..3164889 (25 bp)
GGGCAAAGCACTCCGGTCAGATGTC
LOC_Os01g06710
OsAffx.30352.3.S1_at--995--7813Chr09:16602385..16602408 (24 bp)
GGTCAGATGTCTCCCCTCGTCGCTA
NONE
OsAffx.30352.3.S1_at--724--7211Chr01:3164833..3164857 (25 bp)
GTCGCTACGTCGACATTACGACACG
LOC_Os01g06710
Target Sequence 
AAGTCCACCCACAATTCAGCTCGGAGGGTTCAAGACGAAGCACATCTTCCTCTCAAGAAGCAACTAGAGCTTCAGCCCCT
TGTCTTCCTATCGGTACAGGAGAAGGATCGTTATCTGATAGGGGCAAAGCACTCCGGTCAGATGTCTCCCCTCGTCGCTA
CGTCGACATTACGACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30352.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis