Browse Element(s) Details


OsAffx.30380.1.S1_at

Description tigr:9638.m00932
TID=OsAffx.30380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1057011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10530OsAffx.8412.1.S1_at11/1110+5583011..5583419hypothetical protein
LOC_Os10g10540Os.46713.1.A1_at7/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10540Os.56042.1.S1_at1/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10550OsAffx.18205.1.S1_at10/1110+5597449..5598286hypothetical protein
LOC_Os10g10550OsAffx.29033.1.S1_at1/1110+5597449..5598286hypothetical protein
LOC_Os10g10560OsAffx.18206.1.S1_x_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10560OsAffx.18206.1.S1_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10570OsAffx.30380.1.S1_at11/1110+5603848..5604574hypothetical protein
LOC_Os10g10580Os.12620.1.S1_at10/1110+5607752..5609629hypothetical protein
LOC_Os10g10580OsAffx.348.1.S1_at8/1110+5607752..5609629hypothetical protein
LOC_Os10g10590Os.45173.1.S1_x_at3/1110+5616230..5618587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10600NANA10+5618855..5623276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10610OsAffx.18207.1.S1_at9/1110+5628870..5630712hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30380.1.S1_at--45--7571Chr10:5603908..5603932 (25 bp)
GGGCCCAAGGGCAATACGACCACAA
LOC_Os10g10570
OsAffx.30380.1.S1_at--73--7611Chr10:5603916..5603940 (25 bp)
GGGCAATACGACCACAACTACGTCA
LOC_Os10g10570
OsAffx.30380.1.S1_at--417--7091Chr10:5603937..5603961 (25 bp)
GTCAACACAACTCCCCATTGATGTA
LOC_Os10g10570
OsAffx.30380.1.S1_at--1014--11Chr10:5603953..5603977 (25 bp)
ATTGATGTAGTTGTAGGAGGTCCAC
LOC_Os10g10570
OsAffx.30380.1.S1_at--104--6151Chr10:5603969..5603993 (25 bp)
GAGGTCCACTAGCAGCGTCGTTGAA
LOC_Os10g10570
OsAffx.30380.1.S1_at--17--1511Chr10:5603979..5604003 (25 bp)
AGCAGCGTCGTTGAACATGGACCAT
LOC_Os10g10570
OsAffx.30380.1.S1_at--992--2491Chr10:5603992..5604016 (25 bp)
AACATGGACCATGAGCTTGGACACT
LOC_Os10g10570
OsAffx.30380.1.S1_at--244--691Chr10:5604002..5604026 (25 bp)
ATGAGCTTGGACACTACGGCCCAAG
LOC_Os10g10570
OsAffx.30380.1.S1_at--445--1931Chr10:5604017..5604423 (25 bp)
ACGGCCCAAGAGACCGCTATCGGGA
LOC_Os10g10570
OsAffx.30380.1.S1_at--469--4871Chr10:5604414..5604438 (25 bp)
GCTATCGGGACCCTCCATCAGCAAG
LOC_Os10g10570
OsAffx.30380.1.S1_at--566--2551Chr10:5604515..5604539 (25 bp)
AACTGCCATGGAAGCTCCTATGATC
LOC_Os10g10570
Target Sequence 
GGGCCCAAGGGCAATACGACCACAACTACGTCAACACAACTCCCCATTGATGTAGTTGTAGGAGGTCCACTAGCAGCGTC
GTTGAACATGGACCATGAGCTTGGACACTACGGCCCAAGAGACCGCTATCGGGACCCTCCATCAGCAAGGAGGATAGAGG
AGCTTGGTGACAGTGTTGAGCATGGAGGGTGTAGTGCAGAGATAATTGAAGGAAGTACGTACAACAACTGCCATGGAAGC
TCCTATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis